PhysioExperiment - Shared Data Model for Physiological Signal Analysis
Provides the shared data model for the Physio ecosystem: the PhysioExperiment class, a 'SummarizedExperiment' extension for multi-modal physiological signal data (such as electroencephalography, electromyography, and electrocardiography), together with the containers for multiple simultaneously recorded streams, repeated sessions of one subject, and cohorts of subjects. Includes core accessors, channel and event management, provenance, and basic 'S4' methods. Domain packages apply specialized methods to these shared containers and are installed separately.
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softwareinfrastructuredatarepresentationtimecourse
4.82 score 22 dependentsPhysioPreprocess - Preprocessing Functions for PhysioExperiment Objects
Provides preprocessing functions for physiological signal data stored in 'SummarizedExperiment'-derived objects, including digital filters ('Butterworth' and notch), resampling, re-referencing, artifact detection, independent component analysis ('ICA') based artifact removal, and composable preprocessing pipelines.
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cppopenmp
3.95 score 3 dependentsPhysioIO - Input and Output Functions for 'PhysioExperiment' Objects
Provides input and output capabilities for 'SummarizedExperiment'-derived physiological signal containers. Supported formats include 'EDF' and 'EDF+', 'BDF', 'GDF', 'BrainVision', 'HDF5', 'BIDS', comma-separated values, and 'MATLAB' files, together with 'DuckDB' database integration. Out-of-memory processing of large datasets is available through delayed 'HDF5' arrays.
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softwareinfrastructuredataimportdatarepresentation
3.65 score 1 dependentsPhysioCore - Compatibility Layer for the PhysioExperiment Data Model
Compatibility package. The shared data model that used to live here -- the PhysioExperiment class and the containers for multiple streams, repeated sessions and cohorts -- now lives in the 'PhysioExperiment' package. This package re-exports that public interface unchanged, so existing code written against 'PhysioCore' keeps working, including 'S4' objects saved while the classes were defined here. New code should depend on 'PhysioExperiment' directly.
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softwareinfrastructuredatarepresentationtimecourse
2.70 scoresynergyMixR - Mixture-Based Muscle Synergy Analysis
Provides tools for analyzing muscle synergy using various statistical methods including MPCA and MFA. Enables researchers to identify distinct subgroups within populations that exhibit different muscle synergy patterns, rather than forcing all subjects into a single global model.
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openblascppopenmp
1.70 score