Package: PhysioReport 0.1.2

Yusuke Matsui

PhysioReport: Clinical Report Generation for the x-biosignal Ecosystem

Parameterized, bilingual (Japanese/English), colorblind-safe clinical reports (gait, HRV, EMG) with normative overlays and MDC/MCID-annotated change for the x-biosignal physiological signal ecosystem.

Authors:Yusuke Matsui [aut, cre]

PhysioReport_0.1.2.tar.gz
PhysioReport_0.1.2.zip(r-4.7-any)PhysioReport_0.1.2.zip(r-4.6-any)PhysioReport_0.1.2.zip(r-4.5-any)
PhysioReport_0.1.2.tgz(r-4.6-any)PhysioReport_0.1.2.tgz(r-4.5-any)
PhysioReport_0.1.2.tar.gz(r-4.7-any)PhysioReport_0.1.2.tar.gz(r-4.6-any)
PhysioReport_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PhysioReport/json (API)

# Install 'PhysioReport' in R:

install.packages('PhysioReport', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/x-biosignal/physioexperiment/issues

Pkgdown/docs site:https://x-biosignal.github.io

On CRAN:

2.70 score 17 exports 36 dependencies

Last updated from:52c5b4bd12. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel	NOTE	174
source / vignettes	OK	190
linux-release	NOTE	170
macos-release	NOTE	124
macos-oldrel	NOTE	117
windows-devel	NOTE	125
windows-release	NOTE	141
windows-oldrel	NOTE	121
wasm-release	OK	124

Exports:annotateChange as.timelineData buildDocxReport clinicalGaitReport gaitIndexDashboard longitudinalTimeline NormativeModel normativeZScore physioLabel plotBlandAltman plotChangeAnnotated plotNormativeBand plotOutcomeRadar plotSCED renderClinicalReport reportTheme scedStats

Dependencies:abind Biobase BiocGenerics cli cpp11 DelayedArray digest farver generics GenomicRanges ggplot2 glue gtable IRanges isoband labeling lattice lifecycle Matrix MatrixGenerics matrixStats PhysioExperiment R6 RColorBrewer rlang S4Arrays S4Vectors S7 scales Seqinfo SparseArray SummarizedExperiment vctrs viridisLite withr XVector

Building blocks of a clinical outcome report

Normative reference and z-scores | Change against MDC and MCID | Single-case designs | Bilingual labels | Where to go next

Rendered fromclinical-reporting.Rmdusingknitr::rmarkdown

Last update: 2026-10-03
Started: 2026-10-03

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Classify pre-to-post change against MDC and MCID thresholds	annotateChange
Adapt a longitudinal tracker to timeline data	as.timelineData as.timelineData.default as.timelineData.MSKLongitudinalTracker
Build an editable DOCX clinical report (officer)	buildDocxReport
Clinical gait report dashboard	clinicalGaitReport
Gait index dashboard panel (GDI / GPS / MAP)	gaitIndexDashboard
Longitudinal patient timeline (swimlane)	longitudinalTimeline
Normative reference model (mean / SD corridor)	NormativeModel
Normative z-score of an observation	normativeZScore
Bilingual (Japanese / English) label lookup for reports	physioLabel
Bland-Altman agreement plot	plotBlandAltman
Forest-style plot of annotated pre-to-post changes	plotChangeAnnotated
Plot an observation against a normative band	plotNormativeBand
Multi-domain outcome radar (spider) plot	plotOutcomeRadar
Single-case (SCED) plot with phase overlays	plotSCED
Render a parameterized clinical report (PDF / DOCX / HTML)	renderClinicalReport
The x-biosignal report theme	reportTheme
Single-case (SCED) effect-size summary	scedStats