Package: PhysioExperiment 1.0.0
PhysioExperiment: Unified Analysis of Physiological Signals
A comprehensive R/Bioconductor framework for physiological signal analysis. Provides a unified data model (PhysioExperiment class extending SummarizedExperiment) for multi-modal sensor signals (EEG, EMG, ECG, IMU, MoCap). Includes file I/O (EDF, BDF, BrainVision, GDF, HDF5, BIDS, CSV, MATLAB), database integration (DuckDB), signal preprocessing (filtering, artifact removal, epoching), time-frequency analysis, connectivity analysis, network metrics, statistical testing (SPM1D, permutation tests), and publication-quality visualization.
Authors:
PhysioExperiment_1.0.0.tar.gz
PhysioExperiment_1.0.0.zip(r-4.7)PhysioExperiment_1.0.0.zip(r-4.6)PhysioExperiment_1.0.0.zip(r-4.5)
PhysioExperiment_1.0.0.tgz(r-4.6-x86_64)PhysioExperiment_1.0.0.tgz(r-4.6-arm64)PhysioExperiment_1.0.0.tgz(r-4.5-x86_64)PhysioExperiment_1.0.0.tgz(r-4.5-arm64)
PhysioExperiment_1.0.0.tar.gz(r-4.7-arm64)PhysioExperiment_1.0.0.tar.gz(r-4.7-x86_64)PhysioExperiment_1.0.0.tar.gz(r-4.6-arm64)PhysioExperiment_1.0.0.tar.gz(r-4.6-x86_64)
PhysioExperiment_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PhysioExperiment/json (API)
| # Install 'PhysioExperiment' in R: |
| install.packages('PhysioExperiment', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/x-biosignal/physioexperiment/issues
softwaretimecoursepreprocessingopenblascppopenmp
Last updated from:e350f8a60d. Checks:8 ERROR, 2 OK, 3 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | ERROR | 257 | ||
| linux-devel-x86_64 | ERROR | 269 | ||
| source / vignettes | OK | 276 | ||
| linux-release-arm64 | ERROR | 257 | ||
| linux-release-x86_64 | ERROR | 326 | ||
| macos-release-arm64 | ERROR | 172 | ||
| macos-release-x86_64 | ERROR | 365 | ||
| macos-oldrel-arm64 | FAIL | 71 | ||
| macos-oldrel-x86_64 | FAIL | 219 | ||
| windows-devel | ERROR | 287 | ||
| windows-release | ERROR | 305 | ||
| windows-oldrel | FAIL | 66 | ||
| wasm-release | OK | 186 |
Exports:addEventsadjacencyMatrixanovaEpochsapplyMontageas.data.frameassaySamplingRatesaverageEpochsbandPowerbaselineCorrectbetweennessCentralitybinarizeNetworkbootstrapCIbutterworthFiltercbindPhysiochannelInfochannelInfo<-channelNameschannelNames<-checkGUIDependenciescheckNAclassifyICAComponentscleanDataclusteringCoefficientclusterPermutationTestcoherenceconnectDatabaseconnectivityMatrixcorrectPValuescorrelationMatrixcrossSpectrumdbStatsdecimatedefaultAssaydeleteExperimentdetectArtifactsdetectBadChannelsdetrendSignaldisconnectDatabasedropChannelsdurationeffectSizeeigenvectorCentralityepochDataepochSlidingepochTimeseventQueryextractWindowfftSignalsfillEdgeNAfilterSignalsfilterTypefilterValuefindSignificantWindowsfirFiltergetChannelsByTypegetCurrentReferencegetElectrodePositionsgetEventsgetReferenceglobalEfficiencygrandAveragegraphLaplacianhandleNAhasNAhilbertTransformicaDecomposeicaRemoveinitPhysioSchemainstantaneousAmplitudeinstantaneousPhaseinterpolateinterpolateBadChannelsisAverageReferencedisHDF5BackedlaunchGUIlistBIDSSessionslistBIDSSubjectsloadExperimentlocalEfficiencymodularitynaSummarynChannelsnEventsnodeDegreenotchFilterpathLengthPhysioEventsPhysioExperimentpickChannelspliplotAdjacencyMatrixplotDynamicConnectivityplotERPplotMultiChannelplotNetworkplotNetworkMetricsplotNetworkStabilityplotPSDplotSignalplotSpectrogramplotSPMplotTopomapplotTopomapSeriesplvqueryExperimentsrbindPhysioreadBDFreadBIDSreadBrainVisionreadCSVreadEDFreadElectrodePositionsCSVreadEventsCSVreadGDFreadMATreadPhysioreadPhysioHDF5realizeHDF5registerExperimentrejectBadEpochsremoveEventsrenameChannelsreplaceNArereferenceresampleresolveQuerysamplesToTimesamplingRatesamplingRate<-setAssaySamplingRatesetChannelTypessetChannelUnitssetElectrodePositionssetEventssetReferenceshowslidingWindowConnectivitysmallWorldnessspectralClusteringspectralDecompositionspectrogramspmAnovaspmPairedTTestspmTTeststartAPIServersummarytemporalStabilitythresholdNetworktimeIndextimeToSamplestTestEpochsvalidateBIDSwaveletTransformwPLIwriteAssayHDF5writeBDFwriteBIDSwriteBrainVisionwriteCSVwriteEDFwriteElectrodePositionsCSVwriteEventsCSVwriteGDFwriteMATwritePhysiowritePhysioHDF5
Dependencies:abindBiobaseBiocGenericsbiocmakeclicpp11DBIDelayedArraydir.expiryfarverfilelockgenericsGenomicRangesggplot2gluegtableh5mreadHDF5ArrayIRangesisobandjsonlitelabelinglatticelifecycleMASSMatrixMatrixGenericsmatrixStatsR6RColorBrewerRcppRcppArmadillorhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsS7scalesSeqinfosignalSparseArraySummarizedExperimentvctrsviridisLitewithrXVector
