Package: PhysioAnnotationHub 0.1.0

Matsui Lab
PhysioAnnotationHub: Anatomical and Clinical Knowledge Graph for Physiological Data
Centralized annotation hub providing anatomical ontology, muscle/bone metadata, nerve innervation, clinical codes (ICD-10, ICF), and knowledge graph queries for the physio-ecosystem.
Authors:
PhysioAnnotationHub_0.1.0.tar.gz
PhysioAnnotationHub_0.1.0.zip(r-4.7)PhysioAnnotationHub_0.1.0.zip(r-4.6)PhysioAnnotationHub_0.1.0.zip(r-4.5)
PhysioAnnotationHub_0.1.0.tgz(r-4.6-any)PhysioAnnotationHub_0.1.0.tgz(r-4.5-any)
PhysioAnnotationHub_0.1.0.tar.gz(r-4.7-any)PhysioAnnotationHub_0.1.0.tar.gz(r-4.6-any)
PhysioAnnotationHub_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PhysioAnnotationHub/json (API)
| # Install 'PhysioAnnotationHub' in R: |
| install.packages('PhysioAnnotationHub', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/x-biosignal/physioannotationhub/issues
Last updated from:722b239b23. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 106 | ||
| source / vignettes | OK | 153 | ||
| linux-release-x86_64 | NOTE | 102 | ||
| macos-release-arm64 | NOTE | 133 | ||
| macos-oldrel-arm64 | NOTE | 139 | ||
| windows-devel | NOTE | 79 | ||
| windows-release | NOTE | 68 | ||
| windows-oldrel | NOTE | 58 | ||
| wasm-release | OK | 84 |
Exports:getBoneAnnotationgetClinicalCodesgetMuscleAnnotationgetNerveAnnotationkgEnrichmentkgNeighborskgShortestPathloadAnnotationHubqueryKG
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get bone annotations | getBoneAnnotation |
| Get clinical codes for muscles | getClinicalCodes |
| Get muscle annotations | getMuscleAnnotation |
| Get nerve annotations | getNerveAnnotation |
| Functional enrichment analysis for a set of muscles | kgEnrichment |
| Get KG neighbors of an entity | kgNeighbors |
| Find shortest path between two entities in the KG | kgShortestPath |
| Load the PhysioAnnotationHub | loadAnnotationHub |
| Print method for PhysioAnnotationHub | print.PhysioAnnotationHub |
| Query the Knowledge Graph by triple pattern | queryKG |