Load the hub | Anatomical queries | The knowledge graph | ICF classification | Where to go next
Package: PhysioAnnotationHub 0.2.1
Yusuke Matsui
PhysioAnnotationHub: Anatomical and Clinical Knowledge Graph for Physiological Data
Centralized annotation hub providing anatomical ontology, muscle/bone metadata, nerve innervation, clinical codes (ICD-10, ICF), and knowledge graph queries for the physio-ecosystem.
Authors:
PhysioAnnotationHub_0.2.1.tar.gz
PhysioAnnotationHub_0.2.1.zip(r-4.7-any)PhysioAnnotationHub_0.2.1.zip(r-4.6-any)PhysioAnnotationHub_0.2.1.zip(r-4.5-any)
PhysioAnnotationHub_0.2.1.tgz(r-4.6-any)PhysioAnnotationHub_0.2.1.tgz(r-4.5-any)
PhysioAnnotationHub_0.2.1.tar.gz(r-4.7-any)PhysioAnnotationHub_0.2.1.tar.gz(r-4.6-any)
PhysioAnnotationHub_0.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PhysioAnnotationHub/json (API)
| # Install 'PhysioAnnotationHub' in R: |
| install.packages('PhysioAnnotationHub', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/x-biosignal/physioannotationhub/issues
Pkgdown/docs site:https://x-biosignal.github.io
Last updated from:c9a58a6f57. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 103 | ||
| source / vignettes | OK | 136 | ||
| linux-release | NOTE | 97 | ||
| macos-release | NOTE | 100 | ||
| macos-oldrel | NOTE | 101 | ||
| windows-devel | NOTE | 52 | ||
| windows-release | NOTE | 65 | ||
| windows-oldrel | NOTE | 70 | ||
| wasm-release | OK | 73 |
Exports:getBoneAnnotationgetClinicalCodesgetCoreSetgetMuscleAnnotationgetNerveAnnotationicfCategorieskgEnrichmentkgNeighborskgShortestPathlinkInstrumentToICFloadAnnotationHubqueryKGtagICF
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get bone annotations | getBoneAnnotation |
| Get clinical codes for muscles | getClinicalCodes |
| Retrieve a published ICF Core Set | getCoreSet |
| Get muscle annotations | getMuscleAnnotation |
| Get nerve annotations | getNerveAnnotation |
| Look up ICF category titles | icfCategories |
| Functional enrichment analysis for a set of muscles | kgEnrichment |
| Get KG neighbors of an entity | kgNeighbors |
| Find shortest path between two entities in the KG | kgShortestPath |
| Link a clinical instrument to its ICF categories | linkInstrumentToICF |
| Load the PhysioAnnotationHub | loadAnnotationHub |
| Print method for PhysioAnnotationHub | print.PhysioAnnotationHub |
| Query the Knowledge Graph by triple pattern | queryKG |
| Tag a metric or instrument with ICF categories | tagICF |