Package: PhysioEcosystem 1.0.1
PhysioEcosystem: Unified Entry Point for the Physio Ecosystem (Meta-Package)
A meta-package for the Physio ecosystem: attaching it loads and re-exports the public API of the foundation and the core analysis packages (PhysioExperiment shared data model, PhysioIO file/database I/O, PhysioPreprocess signal preprocessing, and PhysioAnalysis time-frequency/connectivity/network/statistics/visualization), so existing code that used the former monolithic 'PhysioExperiment' meta-package keeps working. It also provides the GUI/REST launchers. Domain packages (EEG, ECG, EMG, EDA, MoCap, cross-modal, MSK-Net, OpenSim, clinical) are installed separately from the same ecosystem.
Authors:
PhysioEcosystem_1.0.1.tar.gz
PhysioEcosystem_1.0.1.zip(r-4.7-any)PhysioEcosystem_1.0.1.zip(r-4.6-any)PhysioEcosystem_1.0.1.zip(r-4.5-any)
PhysioEcosystem_1.0.1.tgz(r-4.6-any)PhysioEcosystem_1.0.1.tgz(r-4.5-any)
PhysioEcosystem_1.0.1.tar.gz(r-4.7-any)PhysioEcosystem_1.0.1.tar.gz(r-4.6-any)
PhysioEcosystem_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PhysioEcosystem/json (API)
| # Install 'PhysioEcosystem' in R: |
| install.packages('PhysioEcosystem', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/x-biosignal/physioecosystem/issues
softwaretimecoursepreprocessing
Last updated from:3a6a8e7ebe. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 292 | ||
| source / vignettes | OK | 229 | ||
| linux-release | NOTE | 317 | ||
| macos-release | NOTE | 232 | ||
| macos-oldrel | NOTE | 255 | ||
| windows-devel | NOTE | 214 | ||
| windows-release | NOTE | 214 | ||
| windows-oldrel | NOTE | 263 | ||
| wasm-release | OK | 129 |
Exports:addEventsadjacencyMatrixAnalysisResultanovaEpochsappendProvenanceapplyMontageapplyPipelineassaySamplingRatesavailableOperationsavailableReadersavailableWritersaverageEpochsbandPowerbaselineCorrectbetweennessCentralitybinarizeNetworkbiomarkerValueblandAltmanbootstrapCIbutterworthFiltercbindPhysiochannelInfochannelInfo<-channelNameschannelNames<-checkGUIDependenciescheckNAclassifyICAComponentscleanDataclusteringCoefficientclusterPermutationTestcohensDcoherenceconnectDatabaseconnectivityMatrixcorrectPValuescorrelationMatrixcreatePipelinecrossSpectrumdbStatsdecimatedefaultAssaydeleteExperimentdeprecate_physiodetectArtifactsdetectBadChannelsdetrendSignaldetrendSignalsdisconnectDatabasedropChannelsdurationeffectSizeeigenvectorCentralityepochDataepochSlidingepochTimesetaSquaredeventQueryextractWindowfftSignalsfillEdgeNAfilterSignalsfilterTypefilterValuefindSignificantWindowsfirFiltergetChannelsByTypegetCurrentReferencegetElectrodePositionsgetEventsgetOperationgetReadergetReferencegetWriterglobalEfficiencygrandAveragegraphLaplacianhandleNAhasNAhilbertTransformicaDecomposeicaRemoveiccinitPhysioSchemainstantaneousAmplitudeinstantaneousPhaseinterpolateinterpolateBadChannelsisAverageReferencedisHDF5BackedlaunchGUIlistBIDSSessionslistBIDSSubjectsloadExperimentlocalEfficiencylogStepmapClinicalCodesmdcmodularitynaSummarynChannelsnEventsnodeDegreeNormativeReferencenotchFilterpathLengthpercentPredictedPhysioBiomarkerPhysioEventsPhysioExperimentphysioPalettepickChannelspliplotAdjacencyMatrixplotDynamicConnectivityplotERPplotMultiChannelplotNetworkplotNetworkMetricsplotNetworkStabilityplotPSDplotSignalplotSpectrogramplotSPMplotTopomapplotTopomapSeriesplvprovenanceprovenance<-queryExperimentsrbindPhysioreadBDFreadBIDSreadBrainVisionreadClinicalMetadataCSVreadCSVreadEDFreadElectrodePositionsCSVreadEventsCSVreadGDFreadMATreadPhysioreadPhysioHDF5realizeHDF5registerExperimentregisterOperationregisterReaderregisterWriterrejectBadEpochsremoveBaselineremoveEventsremoveICAComponentsrenameChannelsreplaceNArereferenceresampleresolveQueryresultTyperesultValuerunICAsamplesToTimesamplingRatesamplingRate<-scale_color_physioscale_colour_physioscale_fill_physiosemsetAssaySamplingRatesetChannelTypessetChannelUnitssetElectrodePositionssetEventssetReferenceslidingWindowConnectivitysmallWorldnessspectralClusteringspectralDecompositionspectrogramspmAnovaspmPairedTTestspmTTeststartAPIServertemporalStabilitytheme_physiothresholdNetworktimeIndextimeToSamplestTestEpochsunregisterOperationunregisterReaderunregisterWritervalidateBIDSvalidateClinicalMetadatawaveletTransformwithProvenancewPLIwriteAssayHDF5writeBDFwriteBIDSwriteBrainVisionwriteCSVwriteEDFwriteElectrodePositionsCSVwriteEventsCSVwriteGDFwriteMATwritePhysiowritePhysioHDF5zScore
Dependencies:abindBiobaseBiocGenericsbiocmakeclicpp11DBIDelayedArraydigestdir.expiryfarverfilelockgenericsGenomicRangesggplot2gluegtableh5mreadHDF5ArrayIRangesisobandjsonlitelabelinglatticelifecycleMASSMatrixMatrixGenericsmatrixStatsPhysioAnalysisPhysioExperimentPhysioIOPhysioPreprocessR6RColorBrewerRcppRcppArmadillorhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsS7scalesSeqinfosignalSparseArraySummarizedExperimentvctrsviridisLitewithrXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check GUI Dependencies | checkGUIDependencies |
| Launch PhysioExperiment GUI | launchGUI |
| Start PhysioExperiment API Server (Non-blocking) | startAPIServer |