Package: PhysioECG 0.4.3

Yusuke Matsui

PhysioECG: ECG Analysis Functions for PhysioExperiment Objects

Provides electrocardiography (ECG) analysis functions for PhysioExperiment objects. Includes R-peak detection (adaptive Pan-Tompkins), RR interval computation, HRV time-domain metrics (SDNN, RMSSD, pNN50), HRV frequency-domain analysis (VLF, LF, HF power), nonlinear HRV (Poincare, Sample Entropy, DFA), ECG morphology analysis (QRS boundaries, QT/QTc intervals), and signal quality assessment with ectopic beat correction.

Authors:Yusuke Matsui [aut, cre]

PhysioECG_0.4.3.tar.gz
PhysioECG_0.4.3.zip(r-4.7-any)PhysioECG_0.4.3.zip(r-4.6-any)PhysioECG_0.4.3.zip(r-4.5-any)
PhysioECG_0.4.3.tgz(r-4.6-any)PhysioECG_0.4.3.tgz(r-4.5-any)
PhysioECG_0.4.3.tar.gz(r-4.7-any)PhysioECG_0.4.3.tar.gz(r-4.6-any)
PhysioECG_0.4.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PhysioECG/json (API)

# Install 'PhysioECG' in R:
install.packages('PhysioECG', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/x-biosignal/physioecg/issues

Pkgdown/docs site:https://x-biosignal.github.io

On CRAN:

Conda:

3.00 score 54 exports 36 dependencies

Last updated from:5164ded72b. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE276
source / vignettesOK236
linux-releaseNOTE272
macos-releaseNOTE201
macos-oldrelNOTE245
windows-develNOTE262
windows-releaseNOTE169
windows-oldrelNOTE230
wasm-releaseOK118

Exports:breathingRatedfaThresholdCrossingsecgAnalyzeecgBaselineCorrectecgBeatSQIecgBeatSQIgateecgDelineateecgDetectAFecgDetectPVCecgDetectRpeaksecgDFAecgDFArollingecgEctopicBurdenecgEDRecgHRRecgHRTecgHRVasymmetryecgHRVautonomicecgHRVfreqecgHRVgeometricecgHRVnonlinearecgHRVpoincareecgHRVsegmentedecgHRVtimeecgHRVtimevaryingecgIntervalsecgProcessecgPRSAecgQualityCheckecgRRcorrectecgRRintervalsecgRSAecgSampleEntropyecgSignalQualitymake_ecgmake_ecg_irregularmake_ecg_noisymake_ecg_pqrstmake_ppgperfusionIndexplotEcgWaveplotHRVpsdplotPoincareplotTachogramppgDetectPulsesppgQualityppgRespirationpulseRateVariabilitypulseWaveFeaturesrespiratoryOnsetsripCalibratesmoothnessPriorsDetrendtidalMetricsventilatoryThreshold

Dependencies:abindBiobaseBiocGenericsclicpp11DelayedArraydigestfarvergenericsGenomicRangesggplot2gluegtableIRangesisobandlabelinglatticelifecycleMatrixMatrixGenericsmatrixStatsPhysioExperimentR6RColorBrewerrlangS4ArraysS4VectorsS7scalesSeqinfoSparseArraySummarizedExperimentvctrsviridisLitewithrXVector

ECG Analysis: R-Peak Detection and HRV Pipeline
Introduction | Setup | Simulating ECG Data | Signal Quality Assessment | Baseline Correction | R-Peak Detection | Adjusting Detection Parameters | RR Interval Computation | Ectopic Beat Detection and Correction | HRV Time-Domain Analysis | HRV Frequency-Domain Analysis | HRV Nonlinear Analysis | Individual Functions | Convenience Wrapper | Complete Analysis Pipeline | References | Session Info
Rendered fromecg-analysis.Rmdusingknitr::rmarkdown

Last update: 2026-10-03
Started: 2026-10-03

ECG Morphology: PQRST Segmentation and Interval Analysis
Introduction | Setup | Simulating ECG with PQRST Morphology | R-Peak Detection | PQRST Waveform Delineation | Understanding Delineation Output | Validating Against Known Fiducials | Computing Clinical ECG Intervals | QRS Duration Analysis | PR Interval Analysis | QT Interval and Bazett Correction | Beat-to-Beat Variability | Complete Morphology Analysis Pipeline | Handling Multi-Channel ECG | References | Session Info
Rendered fromecg-morphology.Rmdusingknitr::rmarkdown

Last update: 2026-10-03
Started: 2026-10-03

Readme and manuals

Help Manual

Help pageTopics
Estimate breathing ratebreathingRate
Detect DFA-a1 threshold crossingsdfaThresholdCrossings
Aggregate ECG HRV and Morphology MetricsecgAnalyze
Correct Baseline Wander in ECG SignalsecgBaselineCorrect
Beat-level Signal Quality Index (bSQI)ecgBeatSQI
Accept/reject ECG channels by bSQIecgBeatSQIgate
Delineate ECG Waveform MorphologyecgDelineate
Detect Atrial Fibrillation / Frequent Ectopy from RR IrregularityecgDetectAF
Detect Premature Ventricular Contractions (PVCs)ecgDetectPVC
Detect R-Peaks in ECG SignalecgDetectRpeaks
Detrended Fluctuation Analysis of RR IntervalsecgDFA
Rolling (time-resolved) DFA alpha1ecgDFArolling
Ectopic Beat BurdenecgEctopicBurden
ECG-Derived Respiration (EDR)ecgEDR
Heart-Rate Recovery (HRR)ecgHRR
Heart-Rate Turbulence (HRT)ecgHRT
Heart-Rate Asymmetry (Poincare Plot Asymmetry) DescriptorsecgHRVasymmetry
Cardiac Autonomic Indices (Toichi CSI / CVI) from the Poincare PlotecgHRVautonomic
HRV Frequency-Domain AnalysisecgHRVfreq
Geometric HRV indices (triangular index and TINN)ecgHRVgeometric
Nonlinear HRV Analysis (Convenience Wrapper)ecgHRVnonlinear
Poincare Plot Descriptors for HRV AnalysisecgHRVpoincare
Segmented (long-term) HRV indices: SDANN and SDNN indexecgHRVsegmented
HRV Time-Domain MetricsecgHRVtime
Time-Varying HRV (Sliding-Window Time and Frequency Metrics)ecgHRVtimevarying
Compute ECG Intervals from DelineationecgIntervals
One-Call ECG Processing PipelineecgProcess
Phase-Rectified Signal Averaging (PRSA): DC and ACecgPRSA
Detect Ectopic Beats in RR Interval DataecgQualityCheck
Correct Ectopic Beats in RR Interval DataecgRRcorrect
Compute RR Intervals from Detected R-PeaksecgRRintervals
Respiratory Sinus Arrhythmia (RSA)ecgRSA
Sample Entropy of RR IntervalsecgSampleEntropy
Assess ECG Signal Quality Per ChannelecgSignalQuality
Create Simulated ECG PhysioExperimentmake_ecg
Create Simulated ECG with Irregular R-R Intervalsmake_ecg_irregular
Create Simulated ECG with Noise Artifactsmake_ecg_noisy
Create Simulated ECG with PQRST Morphologymake_ecg_pqrst
Simulate PPG with known fiducialsmake_ppg
Calculate the PPG perfusion indexperfusionIndex
Plot Annotated ECG WaveformplotEcgWave
Plot HRV Power Spectral Density with Frequency BandsplotHRVpsd
Plot Poincare (Lorenz) Recurrence MapplotPoincare
Plot RR TachogramplotTachogram
Detect systolic peaks in PPGppgDetectPulses
Assess PPG signal qualityppgQuality
Estimate respiration from PPG modulationppgRespiration
Calculate pulse-rate variabilitypulseRateVariability
Extract PPG pulse-wave featurespulseWaveFeatures
Detect respiratory cycle onsetsrespiratoryOnsets
Calibrate two-belt respiratory inductance plethysmographyripCalibrate
Smoothness-priors detrendingsmoothnessPriorsDetrend
Calculate tidal breathing metricstidalMetrics
Detect ventilatory thresholds from incremental exercise dataventilatoryThreshold