Package: PhysioCore 1.0.1

Yusuke Matsui

PhysioCore: Compatibility Layer for the PhysioExperiment Data Model

Compatibility package. The shared data model that used to live here -- the PhysioExperiment class and the containers for multiple streams, repeated sessions and cohorts -- now lives in the 'PhysioExperiment' package. This package re-exports that public interface unchanged, so existing code written against 'PhysioCore' keeps working, including 'S4' objects saved while the classes were defined here. New code should depend on 'PhysioExperiment' directly.

Authors:Yusuke Matsui [aut, cre]

PhysioCore_1.0.1.tar.gz
PhysioCore_1.0.1.zip(r-4.7-any)PhysioCore_1.0.1.zip(r-4.6-any)PhysioCore_1.0.1.zip(r-4.5-any)
PhysioCore_1.0.1.tgz(r-4.6-any)PhysioCore_1.0.1.tgz(r-4.5-any)
PhysioCore_1.0.1.tar.gz(r-4.7-any)PhysioCore_1.0.1.tar.gz(r-4.6-any)
PhysioCore_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PhysioCore/json (API)

# Install 'PhysioCore' in R:

install.packages('PhysioCore', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/x-biosignal/physiocore/issues

Pkgdown/docs site:https://x-biosignal.github.io

On CRAN:

software infrastructure datarepresentation timecourse

2.70 score 164 exports 22 dependencies

Last updated from:4210e7273f. Checks:9 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
linux-devel	OK	176
source / vignettes	OK	200
linux-release	OK	218
macos-release	OK	207
macos-oldrel	OK	144
windows-devel	OK	177
windows-release	OK	169
windows-oldrel	OK	147
wasm-release	OK	100

Exports:.fitMVAR .mvarSpectral addEvents addProvenance addSession addSubject aggregatePhysioFeatures alignment alignment<-alignStreams AnalysisResult appendProvenance applyMontage as.data.frame asMSKTracker asMultiAssayExperiment assaySamplingRates availableOperations availableReaders availableWriters biomarkerValue blandAltman cbindPhysio changeScores channelInfo channelInfo<-channelNames channelNames<-checkNA circularLinearCorrelation circularSummary cohensD cohortData cohortData<-cohortDesign commonClock defaultAssay deprecate_physio design design<-dropChannels duration estimandOf estimateOf etaSquared eventQuery experiments experiments<-extractWindow fillEdgeNA filterType filterValue fPCA getChannelsByType getElectrodePositions getEvents getOperation getReader getReference getWriter groups handleNA harmonize harmonizeChannels harmonizeMontage harmonizeReference harmonizeReport hasMeasuredTimes hasNA icc is.PhysioBiomarker logStep mdc migrateContainer modalities MultiPhysioExperiment MultiRatePhysioExperiment mvarFit mvarOrderSelect mvarTransfer naSummary nChannels nEvents nModalities normativeLookup NormativeReference nStreams nSubjects percentPredicted physioBiomarker PhysioBiomarker PhysioCohort PhysioEvents PhysioExperiment PhysioLongitudinal physioPalette pickChannels provenance provenance<-provenanceHash provenanceOf rayleighTest rbindPhysio readPhysioRDS reconstructFPCA recordActivity registerCurves registerOperation registerReader registerWriter removeEvents renameChannels replaceNA resampleToCommon resolveQuery resultType resultValue samplesToTime samplingRate samplingRate<-samplingRates scale_color_physio scale_colour_physio scale_fill_physio sem session sessions sessions<-setAssaySamplingRate setChannelTypes setChannelUnits setElectrodePositions setEvents setReference show streamNames streamRates streams streams<-streamTimeIndex subject subjectData subjectData<-subjectIds subjects subjects<-subsetCohort summary theme_physio timeIndex timeToSamples timeWindow uncertaintyOf unregisterOperation unregisterReader unregisterWriter updateObject watsonWilliamsTest waveformCMC waveformICC waveformReliability withProvenance wpliEstimate zScore

Dependencies:abind Biobase BiocGenerics cli DelayedArray digest generics GenomicRanges IRanges lattice lifecycle Matrix MatrixGenerics matrixStats PhysioExperiment rlang S4Arrays S4Vectors Seqinfo SparseArray SummarizedExperiment XVector

PhysioCore: using the data model through the compatibility layer

What this package is | Build a PhysioExperiment | Core accessors | Channel management | Events | Extract a time window | Summarize and check for gaps | Where to go next

Rendered fromPhysioCore.Rmdusingknitr::rmarkdown

Last update: 2026-10-03
Started: 2026-10-03

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