A factory returns target objects | The single-modality factories | Cohorts fan out automatically | Synthetic demo data and pure helpers | Where to go next
Package: PhysioPipe 0.1.1
Yusuke Matsui
PhysioPipe: Reproducible 'targets' Pipelines for Physiological Signal Analysis
A collection of reusable 'targets' target factories for the Physio ecosystem: drop-in pipelines for the standard single-modality analyses (ECG heart-rate variability, EEG band power, EMG amplitude/fatigue, EDA skin conductance) plus multi-record cohort branching and Quarto reporting. Each factory returns a list of targets so a whole reproducible '_targets.R' is a couple of lines, with incremental re-runs and byte-level provenance.
Authors:
PhysioPipe_0.1.1.tar.gz
PhysioPipe_0.1.1.zip(r-4.7-any)PhysioPipe_0.1.1.zip(r-4.6-any)PhysioPipe_0.1.1.zip(r-4.5-any)
PhysioPipe_0.1.1.tgz(r-4.6-any)PhysioPipe_0.1.1.tgz(r-4.5-any)
PhysioPipe_0.1.1.tar.gz(r-4.7-any)PhysioPipe_0.1.1.tar.gz(r-4.6-any)
PhysioPipe_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PhysioPipe/json (API)
| # Install 'PhysioPipe' in R: |
| install.packages('PhysioPipe', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/x-biosignal/physioexperiment/issues
Pkgdown/docs site:https://x-biosignal.github.io
Last updated from:a36920226b. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 139 | ||
| source / vignettes | OK | 194 | ||
| linux-release | OK | 147 | ||
| macos-release | OK | 124 | ||
| macos-oldrel | OK | 109 | ||
| windows-devel | OK | 95 | ||
| windows-release | OK | 89 | ||
| windows-oldrel | OK | 87 | ||
| wasm-release | OK | 130 |
Exports:pp_bind_cohortpp_ecg_demo_filespp_ecg_readpp_hrv_combinepp_plot_tachogrampp_simulatepp_wfdb_filespp_write_parquettar_ecg_hrvtar_eda_scrtar_eeg_bandpowertar_emg_featurestar_physio_report
Dependencies:backportsbase64urlcallrclicodetoolscpp11data.tableevaluategluehighrigraphknitrlatticelifecyclemagrittrMatrixotelpillarpkgconfigprettyunitsprocessxpsR6rlangsecretbasetargetstibbletidyselectutf8vctrswithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Stack per-branch data frames from a cohort run into one table | pp_bind_cohort |
| File paths of the bundled demo ECG record (MIT-BIH 100 excerpt) | pp_ecg_demo_files |
| Read a WFDB record (by companion files or base) into a PhysioExperiment | pp_ecg_read |
| Join time- and frequency-domain HRV into one row per channel | pp_hrv_combine |
| Write a simple RR tachogram PNG (headless) and return its path | pp_plot_tachogram |
| Simulate a synthetic PhysioExperiment for demos and tests | pp_simulate |
| Companion files of a WFDB record base | pp_wfdb_files |
| Write a data frame to Parquet (language-neutral interchange) | pp_write_parquet |
| ECG heart-rate-variability pipeline (target factory) | tar_ecg_hrv |
| EDA skin-conductance pipeline (target factory) | tar_eda_scr |
| EEG band-power pipeline (target factory) | tar_eeg_bandpower |
| EMG amplitude / fatigue pipeline (target factory) | tar_emg_features |
| Quarto report pipeline (target factory) | tar_physio_report |