Package: PhysioEEG 0.2.0

Yusuke Matsui

PhysioEEG: EEG Analysis Functions for PhysioExperiment Objects

Provides comprehensive electroencephalography (EEG) analysis functions for PhysioExperiment objects. Includes preprocessing (filtering, re-referencing, bad channel detection, interpolation, epoching, artifact rejection), independent component analysis (FastICA, Infomax, JADE) with automatic artifact detection, event-related potential (ERP) component detection and measurement (N100, P300, N400, P600, MMN), source localization (eLORETA, sLORETA, LCMV beamformer), EEG microstate analysis (K-means, AAHC), sleep staging (AASM criteria, spindle/K-complex/slow-wave detection), brain-computer interface features (CSP, SSVEP, motor imagery), clinical EEG analysis (spike detection, QEEG, asymmetry indices), time-frequency analysis (Morlet wavelet, STFT, multitaper, ERSP, ITC), connectivity analysis (coherence, PLV, wPLI, Granger causality), visualization (signal traces, ERP waveforms, topographic maps, spectrograms, connectivity plots, hypnograms, source maps), and simulated data generators for testing and demonstration.

Authors:Yusuke Matsui

PhysioEEG_0.2.0.tar.gz
PhysioEEG_0.2.0.zip(r-4.7)PhysioEEG_0.2.0.zip(r-4.6)PhysioEEG_0.2.0.zip(r-4.5)
PhysioEEG_0.2.0.tgz(r-4.6-any)PhysioEEG_0.2.0.tgz(r-4.5-any)
PhysioEEG_0.2.0.tar.gz(r-4.7-any)PhysioEEG_0.2.0.tar.gz(r-4.6-any)
PhysioEEG_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PhysioEEG/json (API)

# Install 'PhysioEEG' in R:
install.packages('PhysioEEG', repos = c('https://x-biosignal.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/x-biosignal/physioeeg/issues

On CRAN:

Conda:

3.65 score 67 exports 18 dependencies

Last updated from:578ea81838. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK242
source / vignettesOK235
linux-release-x86_64OK230
macos-release-arm64OK244
macos-oldrel-arm64OK232
windows-develOK201
windows-releaseOK198
windows-oldrelOK183
wasm-releaseOK114

Exports:eegArtifactRejecteegAsymmetryeegBadChannelseegBCIclassifyeegBCIfeatureseegBeamformereegCoherenceeegConnectivityMatrixeegCSPeegEpocheegERPbaselineeegERPdetecteegERPdifferenceeegERPgrandAverageeegERPlatencyeegERPmeasureeegERPtesteegERSPeegFiltereegForwardModeleegGrangerCausalityeegICAeegICAdetecteegICAmixeegICAremoveeegInterpolateeegITCeegKcomplexDetecteegMicrostateBackfiteegMicrostateseegMicrostateSequenceeegMicrostateStatseegMontageeegMorletWaveleteegMotorImageryeegMultitapereegPlotConnectivityeegPlotERPeegPlotHypnogrameegPlotICAeegPlotSignaleegPlotSourceeegPlotSpectrogrameegPlotTopomapeegPlotTopomapSerieseegPLVeegPreprocesseegQEEGeegQuickStarteegRereferenceeegSleepMetricseegSleepStageeegSlowingeegSlowWaveDetecteegSourceEstimateeegSourcePowereegSpikeDetecteegSpindleDetecteegSSVEPeegSTFTeegSuppressioneegWPLImake_eegmake_eeg_bcimake_eeg_erpmake_eeg_sleepmake_eeg_spikes

Dependencies:abindBiobaseBiocGenericsDelayedArraygenericsGenomicRangesIRangeslatticeMatrixMatrixGenericsmatrixStatsPhysioCoreS4ArraysS4VectorsSeqinfoSparseArraySummarizedExperimentXVector

BCI Classification

PhysioEEG Development Team

Rendered frombci-classification.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

Clinical EEG Analysis with PhysioEEG

Rendered fromclinical-eeg.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

Connectivity Analysis

Matsui Lab, Nagoya University

Rendered fromconnectivity-analysis.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

EEG Preprocessing Pipeline

Rendered frompreprocessing-pipeline.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

EEG Source Localization with PhysioEEG

Rendered fromsource-localization.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

ERP Analysis with PhysioEEG

Rendered fromerp-analysis.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

Getting Started with PhysioEEG

Rendered fromgetting-started.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

Sleep EEG Analysis

PhysioEEG Development Team

Rendered fromsleep-analysis.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

Time-Frequency Analysis

PhysioEEG Development Team

Rendered fromtime-frequency-analysis.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2026-03-16
Started: 2026-03-16

Readme and manuals

Help Manual

Help pageTopics
Reject artifacts in epoched EEG dataeegArtifactReject
Frontal Alpha AsymmetryeegAsymmetry
Detect bad EEG channelseegBadChannels
BCI ClassificationeegBCIclassify
BCI Feature ExtractioneegBCIfeatures
EEG Beamformer Source LocalizationeegBeamformer
EEG Coherence AnalysiseegCoherence
EEG Connectivity MatrixeegConnectivityMatrix
Common Spatial Pattern (CSP) AnalysiseegCSP
Epoch continuous EEG dataeegEpoch
Baseline Correct ERP DataeegERPbaseline
Detect ERP ComponentseegERPdetect
ERP Difference WaveformeegERPdifference
Compute Grand Average ERPeegERPgrandAverage
Fractional Area LatencyeegERPlatency
Measure ERP AmplitudeeegERPmeasure
Statistical Testing for ERP DifferenceseegERPtest
Event-Related Spectral Perturbation (ERSP)eegERSP
Filter EEG signalseegFilter
Construct EEG Forward Model (Leadfield Matrix)eegForwardModel
EEG Spectral Granger CausalityeegGrangerCausality
EEG Independent Component Analysis (ICA)eegICA
Detect Artifact ICA ComponentseegICAdetect
Access ICA MetadataeegICAmix
Remove ICA Components from EEGeegICAremove
Interpolate bad EEG channelseegInterpolate
Inter-Trial Coherence (ITC)eegITC
Detect K-ComplexeseegKcomplexDetect
Backfit Microstate Template Maps to EEG DataeegMicrostateBackfit
EEG Microstate SegmentationeegMicrostates
Extract Microstate Sequence as Character LabelseegMicrostateSequence
Compute Microstate StatisticseegMicrostateStats
Assign electrode montage positionseegMontage
Morlet Wavelet Transform for EEGeegMorletWavelet
Motor Imagery ERD/ERS ComputationeegMotorImagery
Multitaper Power Spectral Density for EEGeegMultitaper
Plot Connectivity Matrix or CircleeegPlotConnectivity
Plot ERP Waveform with Confidence IntervaleegPlotERP
Plot Sleep HypnogrameegPlotHypnogram
Plot ICA ComponentseegPlotICA
Plot Multi-Channel EEG Time SerieseegPlotSignal
Plot Source Localization ResultseegPlotSource
Plot Spectrogram (Time-Frequency Heatmap)eegPlotSpectrogram
Plot EEG Topographic MapeegPlotTopomap
Plot Topographic Map SerieseegPlotTopomapSeries
EEG Phase Locking Value (PLV)eegPLV
Full EEG preprocessing pipelineeegPreprocess
Quantitative EEG (QEEG) AnalysiseegQEEG
PhysioEEG Quick Start GuideeegQuickStart
Re-reference EEG dataeegRereference
Compute Sleep MetricseegSleepMetrics
Automatic Sleep StagingeegSleepStage
EEG Slowing DetectioneegSlowing
Detect Slow WaveseegSlowWaveDetect
EEG Source EstimationeegSourceEstimate
Compute Source-Space Band PowereegSourcePower
Detect Epileptic Spikes in EEG DataeegSpikeDetect
Detect Sleep SpindleseegSpindleDetect
SSVEP Frequency DetectioneegSSVEP
Short-Time Fourier Transform for EEGeegSTFT
Burst-Suppression DetectioneegSuppression
EEG Weighted Phase Lag Index (wPLI)eegWPLI
Create Simulated EEG Datamake_eeg
Create EEG with Motor Imagery / SSVEP Patterns for BCImake_eeg_bci
Create EEG with Embedded ERP Componentsmake_eeg_erp
Create EEG with Sleep Stage Characteristicsmake_eeg_sleep
Create EEG with Embedded Epileptic Spikesmake_eeg_spikes