| Title: | ECG Analysis Functions for PhysioExperiment Objects |
|---|---|
| Description: | Provides electrocardiography (ECG) analysis functions for PhysioExperiment objects. Includes R-peak detection (adaptive Pan-Tompkins), RR interval computation, HRV time-domain metrics (SDNN, RMSSD, pNN50), HRV frequency-domain analysis (VLF, LF, HF power), nonlinear HRV (Poincare, Sample Entropy, DFA), ECG morphology analysis (QRS boundaries, QT/QTc intervals), and signal quality assessment with ectopic beat correction. |
| Authors: | Yusuke Matsui |
| Maintainer: | Yusuke Matsui <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 0.2.0 |
| Built: | 2026-05-16 05:30:04 UTC |
| Source: | https://github.com/x-biosignal/PhysioECG |
Removes low-frequency baseline drift from ECG data using either a high-pass moving-average subtraction or a running-median subtraction.
ecgBaselineCorrect( x, method = c("highpass", "median"), cutoff = 0.5, assay_name = NULL, output_assay = "baseline_corrected" )ecgBaselineCorrect( x, method = c("highpass", "median"), cutoff = 0.5, assay_name = NULL, output_assay = "baseline_corrected" )
x |
A PhysioExperiment object with ECG data. |
method |
Correction method: |
cutoff |
Approximate cutoff frequency in Hz (default: 0.5). Controls the window size of the moving average or median filter. |
assay_name |
Name of the input assay.
If |
output_assay |
Name of the assay in which to store the corrected
signal (default: |
A PhysioExperiment with the corrected signal stored in
output_assay.
Clifford, G.D., Azuaje, F. & McSharry, P.E. (2006). Advanced Methods and Tools for ECG Data Analysis. Artech House.
ecgSignalQuality for signal quality assessment,
ecgDetectRpeaks for R-peak detection,
ecgQualityCheck for ectopic beat detection.
For each detected R-peak, identifies QRS complex boundaries (onset and offset) and P-wave and T-wave peaks. QRS boundaries are detected using a gradient-based search from the R-peak, while P and T waves are found as local maxima in physiologically plausible time windows.
ecgDelineate(x, peaks, assay_name = NULL)ecgDelineate(x, peaks, assay_name = NULL)
x |
A PhysioExperiment object with ECG data. |
peaks |
A data.frame of detected R-peaks as returned by
|
assay_name |
Name of the assay to use. If |
A data.frame with one row per beat and the following columns:
Integer channel index (1-based).
Integer beat number within the channel (1-based).
Sample index of the R-peak.
Sample index of QRS complex onset.
Sample index of QRS complex offset (J-point).
QRS complex duration in milliseconds.
Sample index of P-wave peak, or NA if not found
in the search window (300–80 ms before R-peak).
Sample index of T-wave peak, or NA if not found
in the search window (80–500 ms after R-peak).
Sample index of T-wave end estimated by
tangent-intercept method, or NA if T-wave not found.
Returns a zero-row data.frame with the same column structure if no beats are delineated.
Goldberger, A.L., et al. (2000). "PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals." Circulation, 101(23), e215–e220. doi:10.1161/01.CIR.101.23.e215
ecgDetectRpeaks for R-peak detection,
ecgIntervals for computing clinical ECG intervals from
delineation results, ecgSignalQuality for signal quality
assessment.
## Not run: pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 72) peaks <- ecgDetectRpeaks(pe) delin <- ecgDelineate(pe, peaks) head(delin) ## End(Not run)## Not run: pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 72) peaks <- ecgDetectRpeaks(pe) delin <- ecgDelineate(pe, peaks) head(delin) ## End(Not run)
Identifies R-peaks in ECG data using an adaptive dual-threshold Pan-Tompkins detector. The algorithm applies bandpass filtering (5-15 Hz), differentiation, squaring, and moving-window integration followed by adaptive thresholding with running signal and noise level estimates. Automatically detects and handles inverted ECG signals.
ecgDetectRpeaks( x, method = "pan_tompkins", threshold_factor = 0.6, refractory_ms = 200, assay_name = NULL )ecgDetectRpeaks( x, method = "pan_tompkins", threshold_factor = 0.6, refractory_ms = 200, assay_name = NULL )
x |
A PhysioExperiment object with ECG data. |
method |
Detection method. Currently only |
threshold_factor |
Fraction of the peak integrated signal used as the detection threshold (default: 0.6). |
refractory_ms |
Refractory period in milliseconds. No two peaks can be closer than this (default: 200). |
assay_name |
Name of the assay to use. If |
A data.frame with one row per detected R-peak and the following columns:
Integer channel index (1-based).
Integer sample index of the R-peak within the assay matrix.
Time of the R-peak in seconds from signal onset.
Amplitude of the raw signal at the R-peak location (in original units, not inverted).
Returns a zero-row data.frame with the same column structure if no peaks are detected.
Pan, J. & Tompkins, W.J. (1985). "A real-time QRS detection algorithm." IEEE Transactions on Biomedical Engineering, 32(3), 230–236. doi:10.1109/TBME.1985.325532
ecgRRintervals for computing RR intervals from
detected peaks, ecgDelineate for full waveform morphology
analysis, ecgSignalQuality for signal quality assessment.
## Not run: pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 72) peaks <- ecgDetectRpeaks(pe) head(peaks) ## End(Not run)## Not run: pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 72) peaks <- ecgDetectRpeaks(pe) head(peaks) ## End(Not run)
Performs detrended fluctuation analysis (DFA) on RR interval data to characterize fractal scaling properties. Computes alpha1 (short-range correlations, 4–16 beats) and alpha2 (long-range correlations, 16–64 beats).
ecgDFA(rr, short_range = c(4, 16), long_range = c(16, 64))ecgDFA(rr, short_range = c(4, 16), long_range = c(16, 64))
rr |
A data.frame with columns |
short_range |
Numeric vector of length 2 defining the scale range (in beats) for alpha1 (default: c(4, 16)). |
long_range |
Numeric vector of length 2 defining the scale range (in beats) for alpha2 (default: c(16, 64)). |
A data.frame with one row per channel and the following columns:
Integer channel index.
Short-range scaling exponent. Values near 1.0 indicate
fractal-like (healthy) correlations; values near 0.5 indicate
uncorrelated (random) behavior; values near 1.5 suggest
Brownian noise. NA if the series is too short.
Long-range scaling exponent with the same interpretation
as alpha1 but over larger time scales. NA if the series is
too short.
Peng, C.-K., et al. (1994). "Mosaic organization of DNA nucleotides." Physical Review E, 49(2), 1685–1689. doi:10.1103/PhysRevE.49.1685
ecgHRVnonlinear for the combined nonlinear analysis
wrapper, ecgSampleEntropy for sample entropy,
ecgHRVpoincare for Poincare plot descriptors.
Computes heart rate variability frequency-domain metrics from RR interval data using Welch's method or Lomb-Scargle periodogram.
ecgHRVfreq( rr, method = c("welch", "lomb"), vlf_band = c(0.003, 0.04), lf_band = c(0.04, 0.15), hf_band = c(0.15, 0.4) )ecgHRVfreq( rr, method = c("welch", "lomb"), vlf_band = c(0.003, 0.04), lf_band = c(0.04, 0.15), hf_band = c(0.15, 0.4) )
rr |
A data.frame with columns |
method |
Spectral estimation method: |
vlf_band |
Numeric vector of length 2 defining VLF band in Hz (default: c(0.003, 0.04)). |
lf_band |
Numeric vector of length 2 defining LF band in Hz (default: c(0.04, 0.15)). |
hf_band |
Numeric vector of length 2 defining HF band in Hz (default: c(0.15, 0.4)). |
A data.frame with one row per channel and the following columns:
Integer channel index.
Absolute power in the very-low-frequency band (ms^2).
Absolute power in the low-frequency band (ms^2), associated with sympathetic and parasympathetic modulation.
Absolute power in the high-frequency band (ms^2), associated with parasympathetic (vagal) modulation.
Ratio of LF to HF power, or NA if HF power
is zero.
Sum of VLF, LF, and HF power (ms^2).
Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology (1996). "Heart rate variability: Standards of measurement, physiological interpretation and clinical use." Circulation, 93(5), 1043–1065.
ecgRRintervals for computing RR intervals,
ecgHRVtime for time-domain HRV metrics,
ecgHRVnonlinear for nonlinear HRV analysis,
ecgRRcorrect for ectopic beat correction before analysis.
n <- 300 time_sec <- cumsum(rep(0.85, n)) rr_ms <- 850 + 30 * sin(2 * pi * 0.1 * time_sec) rr <- data.frame(channel = rep(1L, n), rr_ms = rr_ms, time_sec = time_sec) result <- ecgHRVfreq(rr, method = "welch")n <- 300 time_sec <- cumsum(rep(0.85, n)) rr_ms <- 850 + 30 * sin(2 * pi * 0.1 * time_sec) rr <- data.frame(channel = rep(1L, n), rr_ms = rr_ms, time_sec = time_sec) result <- ecgHRVfreq(rr, method = "welch")
Computes all nonlinear HRV metrics by calling ecgHRVpoincare,
ecgSampleEntropy, and ecgDFA, and merging
the results into a single data.frame.
ecgHRVnonlinear( rr, m = 2L, r_factor = 0.2, short_range = c(4, 16), long_range = c(16, 64) )ecgHRVnonlinear( rr, m = 2L, r_factor = 0.2, short_range = c(4, 16), long_range = c(16, 64) )
rr |
A data.frame with columns |
m |
Embedding dimension for sample entropy (default: 2). |
r_factor |
Tolerance factor for sample entropy (default: 0.2). |
short_range |
Scale range for DFA alpha1 (default: c(4, 16)). |
long_range |
Scale range for DFA alpha2 (default: c(16, 64)). |
A data.frame with columns: channel, sd1, sd2, sd1_sd2_ratio, sample_entropy, m, r, alpha1, alpha2.
Shaffer, F. & Ginsberg, J.P. (2017). "An overview of heart rate variability metrics and norms." Frontiers in Public Health, 5, 258. doi:10.3389/fpubh.2017.00258
Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology (1996). "Heart rate variability: Standards of measurement, physiological interpretation and clinical use." Circulation, 93(5), 1043–1065.
ecgHRVpoincare for Poincare plot descriptors,
ecgSampleEntropy for sample entropy,
ecgDFA for detrended fluctuation analysis,
ecgHRVtime for time-domain HRV metrics,
ecgHRVfreq for frequency-domain HRV analysis.
Computes Poincare plot descriptors (SD1, SD2, SD1/SD2 ratio) from RR interval data. SD1 reflects short-term variability (perpendicular to the identity line), while SD2 reflects long-term variability (along the identity line).
ecgHRVpoincare(rr)ecgHRVpoincare(rr)
rr |
A data.frame with columns |
A data.frame with one row per channel and the following columns:
Integer channel index.
Standard deviation perpendicular to the identity line (ms), reflecting beat-to-beat (short-term) variability.
Standard deviation along the identity line (ms), reflecting long-term variability.
Ratio of SD1 to SD2, or NA if SD2 is
zero.
Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology (1996). "Heart rate variability: Standards of measurement, physiological interpretation and clinical use." Circulation, 93(5), 1043–1065.
ecgHRVnonlinear for the combined nonlinear analysis
wrapper, ecgSampleEntropy for sample entropy,
ecgDFA for detrended fluctuation analysis.
Compute standard heart rate variability (HRV) time-domain metrics from RR interval data. Calculates SDNN, RMSSD, pNN50, mean RR interval, and mean heart rate for each channel.
ecgHRVtime(rr)ecgHRVtime(rr)
rr |
A data.frame with columns |
A data.frame with one row per channel and the following columns:
Integer channel index.
Mean RR interval in milliseconds.
Standard deviation of all RR intervals (ms), reflecting overall HRV.
Root mean square of successive RR interval differences (ms), reflecting short-term vagal modulation.
Percentage of successive RR intervals differing by more than 50 ms.
Mean heart rate in beats per minute (60000 / mean_rr).
Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology (1996). "Heart rate variability: Standards of measurement, physiological interpretation and clinical use." Circulation, 93(5), 1043–1065.
ecgRRintervals for computing RR intervals,
ecgHRVfreq for frequency-domain HRV analysis,
ecgHRVnonlinear for nonlinear HRV metrics,
ecgQualityCheck for ectopic beat detection before analysis.
Calculates standard clinical ECG intervals from the waveform delineation
produced by ecgDelineate: PR interval, QT interval, QTc
(Bazett correction), QRS duration, and RR interval.
ecgIntervals(delineation, sr)ecgIntervals(delineation, sr)
delineation |
A data.frame as returned by |
sr |
Sampling rate in Hz. |
A data.frame with one row per beat and the following columns:
Integer channel index (1-based).
Integer beat number within the channel.
PR interval in milliseconds (P-wave peak to QRS onset),
or NA if the P wave was not detected.
QT interval in milliseconds (QRS onset to T-wave end),
or NA if the T wave was not detected.
Corrected QT interval using Bazett's formula
(QT / sqrt(RR_sec)), or NA if QT or RR is
unavailable.
QRS complex duration in milliseconds.
RR interval in milliseconds to the next beat, or
NA for the last beat in each channel.
Returns a zero-row data.frame with the same column structure if no beats are present.
Goldberger, A.L., et al. (2000). "PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals." Circulation, 101(23), e215–e220. doi:10.1161/01.CIR.101.23.e215
ecgDelineate for waveform delineation,
ecgDetectRpeaks for R-peak detection,
ecgRRintervals for RR interval computation.
## Not run: pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 72) peaks <- ecgDetectRpeaks(pe) delin <- ecgDelineate(pe, peaks) intervals <- ecgIntervals(delin, samplingRate(pe)) head(intervals) ## End(Not run)## Not run: pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 72) peaks <- ecgDetectRpeaks(pe) delin <- ecgDelineate(pe, peaks) intervals <- ecgIntervals(delin, samplingRate(pe)) head(intervals) ## End(Not run)
Identifies ectopic (abnormal) beats by comparing each RR interval to the local median computed over a sliding window of 5 beats. Beats with deviation exceeding the threshold are marked as ectopic.
ecgQualityCheck(rr, threshold_ms = 300)ecgQualityCheck(rr, threshold_ms = 300)
rr |
A data.frame with columns |
threshold_ms |
Maximum allowed deviation from local median in milliseconds (default: 300). |
The input data.frame with an additional logical column
is_ectopic.
Clifford, G.D., Azuaje, F. & McSharry, P.E. (2006). Advanced Methods and Tools for ECG Data Analysis. Artech House.
Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology (1996). "Heart rate variability: Standards of measurement, physiological interpretation and clinical use." Circulation, 93(5), 1043–1065.
ecgRRcorrect for correcting detected ectopic beats,
ecgRRintervals for computing RR intervals,
ecgHRVtime for time-domain HRV analysis,
ecgSignalQuality for signal quality assessment.
Replaces or removes ectopic beats identified by
ecgQualityCheck. The "interpolate" method uses linear
interpolation from surrounding non-ectopic intervals, while
"remove" simply drops ectopic rows.
ecgRRcorrect(rr, method = c("interpolate", "remove"))ecgRRcorrect(rr, method = c("interpolate", "remove"))
rr |
A data.frame with an |
method |
Correction method: |
A data.frame with corrected RR intervals. The is_ectopic
column is removed from the output.
Clifford, G.D., Azuaje, F. & McSharry, P.E. (2006). Advanced Methods and Tools for ECG Data Analysis. Artech House.
ecgQualityCheck for detecting ectopic beats,
ecgRRintervals for computing RR intervals,
ecgHRVtime for time-domain HRV analysis.
Calculates the time intervals between consecutive R-peaks for each channel. The resulting RR interval series is the standard input for all HRV analysis functions in this package.
ecgRRintervals(x, peaks)ecgRRintervals(x, peaks)
x |
A PhysioExperiment object. |
peaks |
A data.frame of detected peaks as returned by
|
A data.frame with one row per consecutive beat pair and the following columns:
Integer channel index (1-based).
RR interval in milliseconds (time between successive R-peaks).
Time of the first beat in each pair (seconds from signal onset).
Returns a zero-row data.frame with the same column structure if fewer than two peaks are available.
Pan, J. & Tompkins, W.J. (1985). "A real-time QRS detection algorithm." IEEE Transactions on Biomedical Engineering, 32(3), 230–236. doi:10.1109/TBME.1985.325532
ecgDetectRpeaks for R-peak detection,
ecgHRVtime for time-domain HRV metrics,
ecgHRVfreq for frequency-domain HRV analysis,
ecgQualityCheck for ectopic beat detection.
## Not run: pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 60) peaks <- ecgDetectRpeaks(pe) rr <- ecgRRintervals(pe, peaks) head(rr) ## End(Not run)## Not run: pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 60) peaks <- ecgDetectRpeaks(pe) rr <- ecgRRintervals(pe, peaks) head(rr) ## End(Not run)
Computes sample entropy (SampEn) from RR interval data. Sample entropy measures the regularity or predictability of a time series. Lower values indicate more regular (predictable) signals, while higher values indicate more complex (irregular) signals.
ecgSampleEntropy(rr, m = 2L, r_factor = 0.2)ecgSampleEntropy(rr, m = 2L, r_factor = 0.2)
rr |
A data.frame with columns |
m |
Embedding dimension (default: 2). Length of template patterns to compare. |
r_factor |
Tolerance factor (default: 0.2). The tolerance |
A data.frame with one row per channel and the following columns:
Integer channel index.
Sample entropy value (nats). Lower values
indicate more regular signals; higher values indicate more complex
signals. NA if the series is too short or constant.
Embedding dimension used.
Tolerance threshold (ms) computed as r_factor * sd(rr_ms).
Richman, J.S. & Moorman, J.R. (2000). "Physiological time-series analysis using approximate entropy and sample entropy." American Journal of Physiology-Heart and Circulatory Physiology, 278(6), H2039–H2049. doi:10.1152/ajpheart.2000.278.6.H2039
ecgHRVnonlinear for the combined nonlinear analysis
wrapper, ecgHRVpoincare for Poincare plot descriptors,
ecgDFA for detrended fluctuation analysis.
Computes per-channel signal quality metrics for ECG data stored in a PhysioExperiment object. When detected R-peak locations are provided the signal-to-noise ratio is estimated from QRS vs.\ baseline power; otherwise a variance-based estimate is used.
ecgSignalQuality(x, peaks = NULL, assay_name = NULL)ecgSignalQuality(x, peaks = NULL, assay_name = NULL)
x |
A PhysioExperiment object with ECG data. |
peaks |
Optional data.frame of detected R-peaks as returned by
|
assay_name |
Name of the assay to use.
If |
A data.frame with one row per channel and columns:
Integer channel index.
Signal-to-noise ratio in decibels.
RMS amplitude of the low-frequency drift.
Fraction of samples within 1\ min or max.
Composite quality score in the range [0, 1], where 1 indicates excellent quality.
Clifford, G.D., Azuaje, F. & McSharry, P.E. (2006). Advanced Methods and Tools for ECG Data Analysis. Artech House.
Shaffer, F. & Ginsberg, J.P. (2017). "An overview of heart rate variability metrics and norms." Frontiers in Public Health, 5, 258. doi:10.3389/fpubh.2017.00258
ecgDetectRpeaks for R-peak detection,
ecgBaselineCorrect for baseline wander correction,
ecgQualityCheck for ectopic beat detection.
Generates a PhysioExperiment object containing synthetic ECG data with Gaussian-shaped R-peaks at regular intervals. The resulting object is suitable for testing R-peak detection, RR interval computation, and HRV analysis pipelines.
make_ecg(n_time = 5000, n_channels = 1, sr = 500, heart_rate = 72)make_ecg(n_time = 5000, n_channels = 1, sr = 500, heart_rate = 72)
n_time |
Number of time points (default: 5000). |
n_channels |
Number of ECG channels (default: 1). |
sr |
Sampling rate in Hz (default: 500). |
heart_rate |
Heart rate in beats per minute (default: 72). |
A PhysioExperiment object with a single "raw" assay
containing the simulated ECG signal.
Pan, J. & Tompkins, W.J. (1985). "A real-time QRS detection algorithm." IEEE Transactions on Biomedical Engineering, 32(3), 230–236. doi:10.1109/TBME.1985.325532
Clifford, G.D., Azuaje, F. & McSharry, P.E. (2006). Advanced Methods and Tools for ECG Data Analysis. Artech House.
make_ecg_irregular for ECG with ectopic beats,
make_ecg_pqrst for ECG with full PQRST morphology,
make_ecg_noisy for ECG with noise artifacts,
ecgDetectRpeaks for R-peak detection.
pe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 72) pepe <- make_ecg(n_time = 5000, sr = 500, heart_rate = 72) pe
Generates a PhysioExperiment object containing synthetic ECG data with irregular beat timing. Every 5th beat is premature (60\ interval), followed by a compensatory pause (140\ Useful for testing ectopic beat detection and RR interval correction.
make_ecg_irregular(n_time = 5000, sr = 500, heart_rate = 72)make_ecg_irregular(n_time = 5000, sr = 500, heart_rate = 72)
n_time |
Number of time points (default: 5000). |
sr |
Sampling rate in Hz (default: 500). |
heart_rate |
Base heart rate in beats per minute (default: 72). |
A PhysioExperiment object with a single "raw" assay
containing the simulated ECG signal with irregular beats.
Clifford, G.D., Azuaje, F. & McSharry, P.E. (2006). Advanced Methods and Tools for ECG Data Analysis. Artech House.
Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology (1996). "Heart rate variability: Standards of measurement, physiological interpretation and clinical use." Circulation, 93(5), 1043–1065.
make_ecg for regular ECG data,
ecgQualityCheck for ectopic beat detection,
ecgRRcorrect for ectopic beat correction,
ecgRRintervals for RR interval computation.
pe <- make_ecg_irregular(n_time = 5000, sr = 500, heart_rate = 72) pepe <- make_ecg_irregular(n_time = 5000, sr = 500, heart_rate = 72) pe
Generates a PhysioExperiment object containing synthetic ECG data contaminated with multiple noise sources: baseline wander (0.3 Hz sinusoidal drift), powerline interference (50 Hz), and broadband Gaussian noise. Useful for testing signal quality assessment, baseline correction, and filtering pipelines.
make_ecg_noisy( n_time = 5000, n_channels = 1, sr = 500, heart_rate = 72, baseline_amp = 0.3, powerline_amp = 0.1, noise_sd = 0.15 )make_ecg_noisy( n_time = 5000, n_channels = 1, sr = 500, heart_rate = 72, baseline_amp = 0.3, powerline_amp = 0.1, noise_sd = 0.15 )
n_time |
Number of time points (default: 5000). |
n_channels |
Number of ECG channels (default: 1). |
sr |
Sampling rate in Hz (default: 500). |
heart_rate |
Heart rate in beats per minute (default: 72). |
baseline_amp |
Amplitude of baseline wander in arbitrary units (default: 0.3). |
powerline_amp |
Amplitude of 50 Hz powerline noise (default: 0.1). |
noise_sd |
Standard deviation of broadband Gaussian noise (default: 0.15). |
A PhysioExperiment object with a single "raw" assay
containing the noisy ECG signal.
Clifford, G.D., Azuaje, F. & McSharry, P.E. (2006). Advanced Methods and Tools for ECG Data Analysis. Artech House.
Shaffer, F. & Ginsberg, J.P. (2017). "An overview of heart rate variability metrics and norms." Frontiers in Public Health, 5, 258. doi:10.3389/fpubh.2017.00258
make_ecg for clean ECG data,
ecgSignalQuality for signal quality assessment,
ecgBaselineCorrect for baseline wander removal,
ecgDetectRpeaks for R-peak detection.
pe <- make_ecg_noisy(n_time = 5000, sr = 500) pepe <- make_ecg_noisy(n_time = 5000, sr = 500) pe
Generates a PhysioExperiment object containing synthetic ECG data with physiologically realistic P, Q, R, S, and T wave components. Returns both the PhysioExperiment and a data.frame of known fiducial points for validation testing of waveform delineation algorithms.
make_ecg_pqrst( n_time = 10000, n_channels = 1, sr = 500, heart_rate = 72, noise_sd = 0.02 )make_ecg_pqrst( n_time = 10000, n_channels = 1, sr = 500, heart_rate = 72, noise_sd = 0.02 )
n_time |
Number of time points (default: 10000, i.e., 20 seconds at 500 Hz). |
n_channels |
Number of ECG channels (default: 1). |
sr |
Sampling rate in Hz (default: 500). |
heart_rate |
Heart rate in beats per minute (default: 72). |
noise_sd |
Standard deviation of baseline noise (default: 0.02). |
A list with two components:
PhysioExperiment object with the simulated ECG signal.
A data.frame with columns: beat, r_peak,
p_peak, q_point, s_point, t_peak,
qrs_onset, qrs_offset (all in sample indices).
Goldberger, A.L., et al. (2000). "PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals." Circulation, 101(23), e215–e220. doi:10.1161/01.CIR.101.23.e215
Clifford, G.D., Azuaje, F. & McSharry, P.E. (2006). Advanced Methods and Tools for ECG Data Analysis. Artech House.
make_ecg for basic ECG data,
ecgDelineate for PQRST waveform delineation,
ecgIntervals for computing clinical ECG intervals,
ecgDetectRpeaks for R-peak detection.
result <- make_ecg_pqrst(n_time = 10000, sr = 500, heart_rate = 72) pe <- result$pe fiducials <- result$fiducials head(fiducials)result <- make_ecg_pqrst(n_time = 10000, sr = 500, heart_rate = 72) pe <- result$pe fiducials <- result$fiducials head(fiducials)