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"page": "plot_cluster_embedding", "title": "Plot Cluster Embedding", "topics": [ "plot_cluster_embedding" ] }, { "page": "plot_cluster_synergy_loadings_mfa", "title": "Plot Cluster-Specific Synergy Coefficients (Factor Loadings) for MFA", "topics": [ "plot_cluster_synergy_loadings_mfa" ] }, { "page": "plot_cluster_synergy_loadings_mpca", "title": "Plot Cluster-Specific Synergy Coefficients (Factor Loadings) for MPCA", "topics": [ "plot_cluster_synergy_loadings_mpca" ] }, { "page": "plot_confusion_matrix", "title": "Plot Confusion Matrix for Cluster Assignments", "topics": [ "plot_confusion_matrix" ] }, { "page": "plot_fig1_ARI", "title": "Plot ARI vs. Separation/Noise (Figure 1)", "topics": [ "plot_fig1_ARI" ] }, { "page": "plot_fig1_baseline_comparison", "title": "Plot Baseline Comparison (ARI and VAF)", "topics": [ "plot_fig1_baseline_comparison" ] }, { "page": "plot_fig2_BIC_heatmap", "title": "Plot BIC Heatmap for a Subset (Figure 2)", "topics": [ "plot_fig2_BIC_heatmap" ] }, { "page": "plot_fig3_init_boxplot", "title": "Plot Boxplot of ARI for Multiple Initial Seeds (Figure 3)", "topics": [ "plot_fig3_init_boxplot" ] }, { "page": "plot_fig4to6_reconstruction_vaf", "title": "Plot Reconstruction Error and VAF (Figures 4-6)", "topics": [ "plot_fig4to6_reconstruction_vaf" ] }, { "page": "plot_metric_vs_axis", "title": "Plot Metric vs Axis for Parameter Sweep", "topics": [ "plot_metric_vs_axis" ] }, { "page": "plot_neural_command", "title": "Plot Neural Command Trajectories", "topics": [ "plot_neural_command" ] }, { "page": "plot_noise_profiles", "title": "Plot Noise Profiles", "topics": [ "plot_noise_profiles" ] }, { "page": "plot_reconstructed_emg", "title": "Plot Reconstructed EMG Signals", "topics": [ "plot_reconstructed_emg" ] }, { "page": "plot_sse_heatmap", "title": "Plot SSE Heatmap Across Methods and Subjects", "topics": [ "plot_sse_heatmap" ] }, { "page": "plot_sweep_summary", "title": "Plot Summary Comparison for Parameter Sweep", "topics": [ 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"page": "posthoc_mfa_evaluation", "title": "Post-hoc Evaluation of MFA Grid Search", "topics": [ "posthoc_mfa_evaluation" ] }, { "page": "posthoc_mpca_evaluation", "title": "Post-hoc Evaluation of Mixture PCA Grid Search", "topics": [ "posthoc_mpca_evaluation" ] }, { "page": "preprocess_emg", "title": "EMG Preprocessing Pipeline", "topics": [ "preprocess_emg" ] }, { "page": "print.bootstrap_ci", "title": "Print Summary of Bootstrap CI Results", "topics": [ "print.bootstrap_ci" ] }, { "page": "print.calibration_result", "title": "Print Summary of Calibration Results", "topics": [ "print.calibration_result" ] }, { "page": "print.mixture_r_selection", "title": "Print Method for mixture_r_selection Objects", "topics": [ "print.mixture_r_selection" ] }, { "page": "print.preprocessed_emg", "title": "Print Method for preprocessed_emg Objects", "topics": [ "print.preprocessed_emg" ] }, { "page": "read_all_results", "title": "Read All Results from .rds Files", "topics": [ "read_all_results" ] 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