{
  "_id": "6a1f2806b401979e73423149",
  "Package": "PhysioOpenSim",
  "Title": "Native OpenSim C++ Integration for PhysioExperiment",
  "Version": "0.1.0",
  "Authors@R": "person(given = \"Yusuke\",\nfamily = \"Matsui\",\nrole = c(\"aut\", \"cre\"),\nemail = \"matsui.yusuke.bioinfo@gmail.com\")",
  "Description": "Provides a native OpenSim C++ bridge for R via Rcpp. The\npackage exposes OpenSim model-level operations to support\nbiomechanics workflows in the Physio ecosystem. OpenSim linkage\nis optional at build time; when OpenSim is not detected, the\npackage installs with informative runtime errors for\nOpenSim-dependent calls.",
  "VignetteBuilder": "knitr",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "SystemRequirements": "C++17, OpenSim (optional)",
  "Config/testthat/edition": "3",
  "Repository": "https://x-biosignal.r-universe.dev",
  "Date/Publication": "2026-03-16 11:31:42 UTC",
  "RemoteUrl": "https://github.com/x-biosignal/PhysioOpenSim",
  "RemoteRef": "HEAD",
  "RemoteSha": "6271a3d7e1bff982f693f5a713f9def888f9b994",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-16 05:25:16 UTC",
    "User": "root"
  },
  "Author": "Yusuke Matsui [aut, cre]",
  "Maintainer": "Yusuke Matsui <matsui.yusuke.bioinfo@gmail.com>",
  "MD5sum": "d899278c1cc6912c46cee4c6388a02cc",
  "_user": "x-biosignal",
  "_type": "src",
  "_file": "PhysioOpenSim_0.1.0.tar.gz",
  "_fileid": "6b70115311e47047aecaec1d2301d3b082387c15a3f2c1da97debf2fe5008c82",
  "_filesize": 164338,
  "_sha256": "6b70115311e47047aecaec1d2301d3b082387c15a3f2c1da97debf2fe5008c82",
  "_created": "2026-05-16T05:25:16.000Z",
  "_published": "2026-06-02T18:59:18.845Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79149175958,
      "time": 174,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7030806872"
    },
    {
      "job": 79149176077,
      "time": 122,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7030801021"
    },
    {
      "job": 79149175715,
      "time": 140,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7030803152"
    },
    {
      "job": 79149175791,
      "time": 117,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7030800294"
    },
    {
      "job": 79149176045,
      "time": 116,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7030800226"
    },
    {
      "job": 79149175976,
      "time": 204,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7030810449"
    },
    {
      "job": 79149175834,
      "time": 113,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7030799876"
    },
    {
      "job": 79149175830,
      "time": 191,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7030808978"
    },
    {
      "job": 79149175280,
      "time": 152,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7030786363"
    },
    {
      "job": 79149175077,
      "time": 95,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367130291"
    },
    {
      "job": 79149176024,
      "time": 113,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7030799958"
    },
    {
      "job": 79149176061,
      "time": 86,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7030796646"
    },
    {
      "job": 79149175821,
      "time": 104,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7030798871"
    }
  ],
  "_buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/x-biosignal/PhysioOpenSim",
  "_commit": {
    "id": "6271a3d7e1bff982f693f5a713f9def888f9b994",
    "author": "Yusuke Matsui <mail.to.matsui@gmail.com>",
    "committer": "Yusuke Matsui <mail.to.matsui@gmail.com>",
    "message": "docs: Add comprehensive README\n",
    "time": 1773660702
  },
  "_maintainer": {
    "name": "Yusuke Matsui",
    "email": "matsui.yusuke.bioinfo@gmail.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.2.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "x-biosignal",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-12",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "ymatts",
      "count": 2,
      "uuid": 5744286
    }
  ],
  "_userbio": {
    "uuid": 268545536,
    "type": "organization",
    "name": "x-biosignal"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PhysioOpenSim"
  },
  "_devurl": "https://github.com/x-biosignal/physioopensim",
  "_searchresults": 0,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/PhysioOpenSim.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "opensimAvailable",
    "opensimBuildConfig",
    "opensimCLIAvailable",
    "opensimCLIPath",
    "opensimFinalizeConnections",
    "opensimLoadModel",
    "opensimModelComponents",
    "opensimModelInitialize",
    "opensimModelIsInitialized",
    "opensimModelName",
    "opensimModelSummary",
    "opensimRunAnalyze",
    "opensimRunCMC",
    "opensimRunID",
    "opensimRunIK",
    "opensimRunRRA",
    "opensimRunSO",
    "opensimRunTool",
    "opensimSaveModel",
    "opensimSetModelName",
    "opensimWriteAnalyzeSetupFromTemplate",
    "opensimWriteCMCSetupFromTemplate",
    "opensimWriteIDSetupFromTemplate",
    "opensimWriteIKSetupFromTemplate",
    "opensimWriteRRASetupFromTemplate",
    "opensimWriteSOSetupFromTemplate",
    "opensimWriteToolSetupFromTemplate"
  ],
  "_help": [
    {
      "page": "opensimAvailable",
      "title": "Check Whether Native OpenSim Support Is Available",
      "topics": [
        "opensimAvailable"
      ]
    },
    {
      "page": "opensimBuildConfig",
      "title": "Show Build Configuration for OpenSim Native Bridge",
      "topics": [
        "opensimBuildConfig"
      ]
    },
    {
      "page": "opensimCLIAvailable",
      "title": "Check Whether OpenSim CLI Is Available",
      "topics": [
        "opensimCLIAvailable"
      ]
    },
    {
      "page": "opensimCLIPath",
      "title": "Resolve OpenSim CLI Command Path",
      "topics": [
        "opensimCLIPath"
      ]
    },
    {
      "page": "opensimFinalizeConnections",
      "title": "Finalize OpenSim Model Connections",
      "topics": [
        "opensimFinalizeConnections"
      ]
    },
    {
      "page": "opensimLoadModel",
      "title": "Load an OpenSim Model as a Native External Pointer",
      "topics": [
        "opensimLoadModel"
      ]
    },
    {
      "page": "opensimModelComponents",
      "title": "List Core OpenSim Model Component Names",
      "topics": [
        "opensimModelComponents"
      ]
    },
    {
      "page": "opensimModelInitialize",
      "title": "Initialize OpenSim Model System State",
      "topics": [
        "opensimModelInitialize"
      ]
    },
    {
      "page": "opensimModelIsInitialized",
      "title": "Check Whether an OpenSim Model Handle Is Initialized",
      "topics": [
        "opensimModelIsInitialized"
      ]
    },
    {
      "page": "opensimModelName",
      "title": "Get OpenSim Model Name",
      "topics": [
        "opensimModelName"
      ]
    },
    {
      "page": "opensimModelSummary",
      "title": "Summarize an OpenSim Model via Native C++ API",
      "topics": [
        "opensimModelSummary"
      ]
    },
    {
      "page": "opensimRunAnalyze",
      "title": "Run OpenSim Analyze Tool",
      "topics": [
        "opensimRunAnalyze"
      ]
    },
    {
      "page": "opensimRunCMC",
      "title": "Run OpenSim Computed Muscle Control Tool",
      "topics": [
        "opensimRunCMC"
      ]
    },
    {
      "page": "opensimRunID",
      "title": "Run OpenSim Inverse Dynamics Tool",
      "topics": [
        "opensimRunID"
      ]
    },
    {
      "page": "opensimRunIK",
      "title": "Run OpenSim Inverse Kinematics Tool",
      "topics": [
        "opensimRunIK"
      ]
    },
    {
      "page": "opensimRunRRA",
      "title": "Run OpenSim Residual Reduction Algorithm Tool",
      "topics": [
        "opensimRunRRA"
      ]
    },
    {
      "page": "opensimRunSO",
      "title": "Run OpenSim Static Optimization Tool",
      "topics": [
        "opensimRunSO"
      ]
    },
    {
      "page": "opensimRunTool",
      "title": "Run an OpenSim Tool Setup XML",
      "topics": [
        "opensimRunTool"
      ]
    },
    {
      "page": "opensimSaveModel",
      "title": "Save OpenSim Model to File",
      "topics": [
        "opensimSaveModel"
      ]
    },
    {
      "page": "opensimSetModelName",
      "title": "Set OpenSim Model Name",
      "topics": [
        "opensimSetModelName"
      ]
    },
    {
      "page": "opensimWriteAnalyzeSetupFromTemplate",
      "title": "Write Analyze Setup XML from Template",
      "topics": [
        "opensimWriteAnalyzeSetupFromTemplate"
      ]
    },
    {
      "page": "opensimWriteCMCSetupFromTemplate",
      "title": "Write CMC Setup XML from Template",
      "topics": [
        "opensimWriteCMCSetupFromTemplate"
      ]
    },
    {
      "page": "opensimWriteIDSetupFromTemplate",
      "title": "Write ID Setup XML from Template",
      "topics": [
        "opensimWriteIDSetupFromTemplate"
      ]
    },
    {
      "page": "opensimWriteIKSetupFromTemplate",
      "title": "Write IK Setup XML from Template",
      "topics": [
        "opensimWriteIKSetupFromTemplate"
      ]
    },
    {
      "page": "opensimWriteRRASetupFromTemplate",
      "title": "Write RRA Setup XML from Template",
      "topics": [
        "opensimWriteRRASetupFromTemplate"
      ]
    },
    {
      "page": "opensimWriteSOSetupFromTemplate",
      "title": "Write SO Setup XML from Template",
      "topics": [
        "opensimWriteSOSetupFromTemplate"
      ]
    },
    {
      "page": "opensimWriteToolSetupFromTemplate",
      "title": "Write OpenSim Tool Setup XML from Template",
      "topics": [
        "opensimWriteToolSetupFromTemplate"
      ]
    }
  ],
  "_readme": "https://github.com/x-biosignal/PhysioOpenSim/raw/HEAD/README.md",
  "_rundeps": [
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "getting-started.Rmd",
      "filename": "getting-started.html",
      "title": "Getting Started with PhysioOpenSim",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Checking Your Build",
        "Working with Models (Native Backend)",
        "Template-Based Setup",
        "Strict vs. Non-Strict Mode",
        "Running Tools",
        "Backend Selection Guide"
      ],
      "created": "2026-03-16 08:33:13",
      "modified": "2026-03-16 08:33:13",
      "commits": 1
    },
    {
      "source": "opensim-tool-pipeline.Rmd",
      "filename": "opensim-tool-pipeline.html",
      "title": "OpenSim Tool Pipeline: IK to ID to SO",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Prerequisites",
        "Step 1: Inverse Kinematics",
        "Step 2: Inverse Dynamics",
        "Step 3: Static Optimization",
        "Running the Full Pipeline",
        "Inspecting Results",
        "Backend Selection"
      ],
      "created": "2026-03-16 08:33:13",
      "modified": "2026-03-16 08:33:13",
      "commits": 1
    }
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "physioopensim",
  "_universes": [
    "x-biosignal"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-16T05:28:12.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "e4b5286aa5bdb0827df694e948218d5beeb4934b9edaf4a6b53b5ca79009b2d1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-16T05:27:21.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "7db5b234f549c12eae150a48626967b16168e0f15f46a47c94aa57e1c3f17f28",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-16T05:27:39.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "cf536ce60f38069aef6255e339cab2a774b008ed6fec8d9a03ab82c81953e3bc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-16T05:27:14.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "6ba7e25ec1708477671e50c3361e3a1856d1be9baefb089e116e5a35c82c4e61",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-16T05:27:11.000Z",
      "arch": "aarch64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "87b0b17434367c749e62e4dc12f82173ca3b044c3be81597751af57a1fa2406d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-16T05:28:23.000Z",
      "arch": "x86_64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "75bf1fa146f5f633d4debeb0961d83846c65a49f9c48ebcb8571eefd8d341228",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-16T05:27:06.000Z",
      "arch": "aarch64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "9939e519cc827fa765fac4f78825370f2ae9d1f61763c3685c5b83608429141d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-16T05:28:06.000Z",
      "arch": "x86_64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "ff41f1a05d123714867c6e0d9aa5843c19b4ff3e52d397bfa9634eac3aa0b93e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-16T05:26:37.000Z",
      "arch": "x86_64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "25f6a51a444426df8a2f85be748a77eb55923c1711da7f8aae8a01bded7abba9",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-16T05:26:21.000Z",
      "arch": "x86_64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "77a11e465c43b1fd434796a912f6509abee40794e8ecd2289d73f5f4f97f4720",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-16T05:26:37.000Z",
      "arch": "x86_64",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "86283345904701d60383cc78b77dbdc72b29cf4afec15d18c87c6c11860a408b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-06-02T18:59:00.000Z",
      "arch": "emscripten",
      "commit": "6271a3d7e1bff982f693f5a713f9def888f9b994",
      "fileid": "0c7b26621d8edf00f65bc9fa63eeca18b03467fc3a863f4ef21676910b15e863",
      "status": "success",
      "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953774807"
    }
  ]
}