{ "_id": "6ac10ce3552a13804ac7ed89", "Package": "PhysioMoCap", "Title": "Motion Capture and Biomechanics Analysis for PhysioExperiment\nObjects", "Version": "0.7.5", "Authors@R": "person(given = \"Yusuke\",\nfamily = \"Matsui\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mail.to.matsui@gmail.com\")", "Description": "Provides motion capture, pose estimation, and\nbiomechanical simulation analysis for PhysioExperiment objects.\nIncludes I/O for C3D, Venus3D, GaitRec, OpenPose, DeepLabCut,\nMediaPipe, BVH, ASF/AMC, OpenSim, and generic CSV formats.\nProvides marker tracking (Hungarian algorithm), signal\nfiltering, numerical differentiation, resampling, center of\nmass calculation, gait parameters, clinical statistics (ICC,\nSEM, MDC, Bland-Altman), movement phase segmentation, dynamic\ntime warping, movement normalization, functional PCA,\nforce-plate kinetics (GRF filtering, COP, loading rate,\nimpulse), planar inverse dynamics (joint moments/power), EMG\nintegration (rectification, RMS envelope, MVC normalization),\ngait/running/jump task schemas, OpenSim workflow integration,\nand biomechanics-specific visualization.", "VignetteBuilder": "knitr", "License": "MIT + file LICENSE", "URL": "https://github.com/x-biosignal/PhysioMoCap,\nhttps://x-biosignal.r-universe.dev/PhysioMoCap,\nhttps://x-biosignal.github.io/PhysioMoCap/", "BugReports": "https://github.com/x-biosignal/PhysioMoCap/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Collate": "'class-TaskSchema.R' 'utils-provenance.R' 'schemas-prebuilt.R'\n'mocap-skeleton.R' 'mocap-angles.R' 'anatomical-frames.R'\n'mocap-gaps.R' 'mocap-imu.R' 'imu-gait.R' 'mocap-tracking.R'\n'io-openpose.R' 'io-opensim.R' 'pose-fix.R' 'io-c3d.R'\n'io-bvh.R' 'io-deeplabcut.R' 'io-mediapipe.R' 'io-opencap.R'\n'ops-events.R' 'events-zeni.R' 'ops-phases.R' 'ops-normalize.R'\n'ops-dtw.R' 'ops-dimred.R' 'stats-fda.R'\n'opensim-integration.R' 'static-optimization.R' 'vis-biomech.R'\n'vis-movement.R' 'vis-skeleton.R' 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"forwardKinematics2D", "title": "Forward kinematics of a planar chain", "topics": [ "forwardKinematics2D" ] }, { "page": "gaitAtaxiaIndex", "title": "Gait-ataxia composite from gait-variability sub-metrics", "topics": [ "gaitAtaxiaIndex" ] }, { "page": "gaitDeviationIndex", "title": "Gait Deviation Index (Schwartz & Rozumalski 2008)", "topics": [ "gaitDeviationIndex" ] }, { "page": "gaitPatternLibrary", "title": "Registry of supported gait pathology patterns", "topics": [ "gaitPatternLibrary" ] }, { "page": "gaitProfileScore", "title": "Gait Profile Score (overall RMS deviation from the norm)", "topics": [ "gaitProfileScore" ] }, { "page": "gaitVariableScore", "title": "Gait Variable Score (per-variable RMS deviation from the norm)", "topics": [ "gaitVariableScore" ] }, { "page": "gdiBasis", "title": "Build a Gait Deviation Index feature basis from a normative reference", "topics": [ "gdiBasis" ] }, { "page": "get_bone_connections", "title": "Get bone connections from a skeleton", "topics": [ "get_bone_connections" ] }, { "page": "get_limb_pairs", "title": "Get left/right limb pairs for symmetry analysis", "topics": [ "get_limb_pairs" ] }, { "page": "get_segment_lengths", "title": "Compute segment lengths from a PhysioExperiment and skeleton", "topics": [ "get_segment_lengths" ] }, { "page": "getEvent", "title": "Get an event by name from a TaskSchema", "topics": [ "getEvent" ] }, { "page": "getEventNames", "title": "Get event names from a TaskSchema", "topics": [ "getEventNames" ] }, { "page": "getPhase", "title": "Get a phase by name from a TaskSchema", "topics": [ "getPhase" ] }, { "page": "getPhaseColors", "title": "Get phase colors from a TaskSchema", "topics": [ "getPhaseColors" ] }, { "page": "getPhaseData", "title": "Get data for all phases as a list of matrices", "topics": [ "getPhaseData" ] }, { "page": "getPhaseNames", "title": "Get phase names from a TaskSchema", "topics": [ "getPhaseNames" ] }, { "page": "getSchema", "title": "Get a pre-built schema by name", "topics": [ "getSchema" ] }, { "page": "goalEquivalentManifold", "title": "Goal-Equivalent Manifold (GEM) decomposition for a scalar goal", "topics": [ "goalEquivalentManifold" ] }, { "page": "grfLandmarks", "title": "Extract stance-phase landmarks from a time-normalised vertical GRF curve", "topics": [ "grfLandmarks" ] }, { "page": "groodSuntayAngles", "title": "Signed Grood-Suntay / ISB joint angles from segment frames", "topics": [ "groodSuntayAngles" ] }, { "page": "hamstringQuadRatio", "title": "Conventional and functional hamstring-to-quadriceps ratios", "topics": [ "hamstringQuadRatio" ] }, { "page": "harmonicRatio", "title": "Harmonic ratio of a trunk-acceleration signal", "topics": [ "harmonicRatio" ] }, { "page": "hasValidPhases", "title": "Check if all phases are valid", "topics": [ "hasValidPhases" ] }, { "page": "instrumented10mWT", "title": "Instrumented 10-metre walk test (10mWT)", "topics": [ "instrumented10mWT" ] }, { "page": "instrumentedTUG", "title": "Instrumented Timed Up-and-Go (iTUG)", "topics": [ "instrumentedTUG" ] }, { "page": "integrateEMGMoCap", "title": "Integrate EMG and MoCap signals onto a common timeline", "topics": [ "integrateEMGMoCap" ] }, { "page": "inverseDynamics2D", "title": "Compute 2D lower-limb joint moments with inverse dynamics", "topics": [ "inverseDynamics2D" ] }, { "page": "inverseDynamics3D", "title": "Compute 3D lower-limb joint moments with inverse dynamics", "topics": [ "inverseDynamics3D" ] }, { "page": "inverseDynamicsRNE", "title": "Recursive Newton-Euler inverse dynamics for the lower limb", "topics": [ "inverseDynamicsRNE" ] }, { "page": "inverseKinematicsMarkers", "title": "Model-based inverse kinematics from markers (planar)", "topics": [ "inverseKinematicsMarkers" ] }, { "page": "jointCoordinateSystem", "title": "Build embedded anatomical segment coordinate systems from marker clusters", "topics": [ "jointCoordinateSystem" ] }, { "page": "jointWork", "title": "Integrate joint power into concentric and eccentric work", "topics": [ "jointWork" ] }, { "page": "kalmanOrientation", "title": "Kalman orientation filter (tilt + gyro-bias)", "topics": [ "kalmanOrientation" ] }, { "page": "labelPowerBursts", "title": "Label joint power bursts with Winter nomenclature", "topics": [ "labelPowerBursts" ] }, { "page": "ldlj", "title": "Log Dimensionless Jerk (LDLJ) movement smoothness", "topics": [ "ldlj" ] }, { "page": "limbAtaxiaIndex", "title": "Limb-ataxia composite from reaching sub-metrics", "topics": [ "limbAtaxiaIndex" ] }, { "page": "limitsOfStability", "title": "Limits of Stability (LOS) reaction time, excursion and directional control", "topics": [ "limitsOfStability" ] }, { "page": "listSchemas", "title": "Get list of all pre-built schemas", "topics": [ "listSchemas" ] }, { "page": "localDynamicStability", "title": "Local dynamic stability (short- and long-term divergence)", "topics": [ "localDynamicStability" ] }, { "page": "mahonyAHRS", "title": "Mahony AHRS orientation filter", "topics": [ "mahonyAHRS" ] }, { "page": "manualEvents", "title": "Manually specify event times", "topics": [ "manualEvents" ] }, { "page": "maxLyapunovExponent", "title": "Largest Lyapunov exponent (Rosenstein)", "topics": [ "maxLyapunovExponent" ] }, { "page": "mCTSIB", "title": "Modified Clinical Test of Sensory Interaction on Balance (mCTSIB)", "topics": [ "mCTSIB" ] }, { "page": "movementAnalysisProfile", "title": "Movement Analysis Profile (GVS per variable plus the GPS)", "topics": [ "movementAnalysisProfile" ] }, { "page": "movementSmoothness", "title": "Movement-smoothness battery (SPARC + LDLJ)", "topics": [ "movementSmoothness" ] }, { "page": "movementTime", "title": "Reaching movement time", "topics": [ "movementTime" ] }, { "page": "movementUnits", "title": "Count reaching movement units", "topics": [ "movementUnits" ] }, { "page": "movingAverage", "title": "Simple moving average filter", "topics": [ "movingAverage" ] }, { "page": "nhptDexterity", "title": "Instrumented Nine-Hole-Peg dexterity from a hand-speed profile", "topics": [ "nhptDexterity" ] }, { "page": "normalizedTimeAxis", "title": "Time axis for normalized data", "topics": [ "normalizedTimeAxis" ] }, { "page": "normalizeEMG", "title": "Normalize EMG by MVC or peak", "topics": [ "normalizeEMG" ] }, { "page": "normalizeMovement", "title": "Normalize movement data", "topics": [ "normalizeMovement" ] }, { "page": "pathStraightness", "title": "Movement-path straightness", "topics": [ "pathStraightness" ] }, { "page": "peakPressure", "title": "Calculate a peak plantar-pressure map", "topics": [ "peakPressure" ] }, { "page": "peakTorque", "title": "Peak torque from isometric or isokinetic dynamometry", "topics": [ "peakTorque" ] }, { "page": "peakVelocity", "title": "Peak reaching velocity", "topics": [ "peakVelocity" ] }, { "page": "Phase", "title": "Create a Phase definition", "topics": [ "Phase" ] }, { "page": "phaseDurations", "title": "Get phase durations", "topics": [ "phaseDurations" ] }, { "page": "phaseRatios", "title": "Calculate phase ratios", "topics": [ "phaseRatios" ] }, { "page": "phaseTiming", "title": "Get phase timing information", "topics": [ "phaseTiming" ] }, { "page": "pipelineACLrts", "title": "ACL return-to-sport pipeline (limb symmetry index)", "topics": [ "pipelineACLrts" ] }, { "page": "pipelineAmputee", "title": "Amputee prosthetic-side work-asymmetry pipeline", "topics": [ "pipelineAmputee" ] }, { "page": "pipelineCPgait", "title": "Cerebral-palsy gait pipeline (GDI + pathology flags)", "topics": [ "pipelineCPgait" ] }, { "page": "pipelinePDfog", "title": "Parkinson's freezing-of-gait pipeline (freeze index)", "topics": [ "pipelinePDfog" ] }, { "page": "pipelineStrokePropulsion", "title": "Stroke paretic-propulsion pipeline", "topics": [ "pipelineStrokePropulsion" ] }, { "page": "planarLimbModel", "title": "Planar two-segment limb model (equations of motion)", "topics": [ "planarLimbModel" ] }, { "page": "plotBlandAltman", "title": "Bland-Altman agreement plot", "topics": [ "plotBlandAltman" ] }, { "page": "plotCorrelationMatrix", "title": "Plot correlation matrix heatmap", "topics": [ "plotCorrelationMatrix" ] }, { "page": "plotCycle", "title": "Plot normalized movement cycle", "topics": [ "plotCycle" ] }, { "page": "plotDTW", "title": "Plot DTW alignment", "topics": [ "plotDTW" ] }, { "page": "plotEffectSizeForest", "title": "Plot effect size forest plot", "topics": [ "plotEffectSizeForest" ] }, { "page": "plotFPCA", "title": "Plot fPCA results", "topics": [ "plotFPCA" ] }, { "page": "plotGaitCycle", "title": "Plot gait cycle normalized waveforms", "topics": [ "plotGaitCycle" ] }, { "page": "plotGroupComparison", "title": "Plot group comparison with task context", "topics": [ "plotGroupComparison" ] }, { "page": "plotMAP", "title": "Plot a Movement Analysis Profile", "topics": [ "plotMAP" ] }, { "page": "plotMultiPanel", "title": "Plot multi-panel movement data", "topics": [ "plotMultiPanel" ] }, { "page": "plotPCAScatter", "title": "Plot PCA scatter", "topics": [ "plotPCAScatter" ] }, { "page": "plotPCAVariance", "title": "Plot PCA variance explained", "topics": [ "plotPCAVariance" ] }, { "page": "plotPhaseDurations", "title": "Plot phase duration comparison", "topics": [ "plotPhaseDurations" ] }, { "page": "plotPhasePortrait", "title": "Plot phase portrait", "topics": [ "plotPhasePortrait" ] }, { "page": "plotPressureMap", "title": "Plot a plantar-pressure map", "topics": [ "plotPressureMap" ] }, { "page": "plotSkeleton", "title": "Plot a 2D stick-figure skeleton", "topics": [ "plotSkeleton" ] }, { "page": "plotSkeleton3D", "title": "Plot a skeleton frame in pseudo-3D", "topics": [ "plotSkeleton3D" ] }, { "page": "plotSkeletonOverlay", "title": "Plot overlaid skeleton frames", "topics": [ "plotSkeletonOverlay" ] }, { "page": "plotSkeletonSequence", "title": "Plot a sequence of skeleton frames", "topics": [ "plotSkeletonSequence" ] }, { "page": "plotSpaghetti", "title": "Plot spaghetti plot (all subjects with mean)", "topics": [ "plotSpaghetti" ] }, { "page": "plotSymmetry", "title": "Plot symmetry comparison (left vs right)", "topics": [ "plotSymmetry" ] }, { "page": "plotTrajectory", "title": "Plot movement trajectory (2D)", "topics": [ "plotTrajectory" ] }, { "page": "plotTUG", "title": "Plot an instrumented TUG timeline", "topics": [ "plotTUG" ] }, { "page": "plotUMAP", "title": "Plot UMAP embedding", "topics": [ "plotUMAP" ] }, { "page": "plotWaveformComparison", "title": "Plot waveform comparison across groups", "topics": [ "plotWaveformComparison" ] }, { "page": "poseFix", "title": "Detect and correct pose-estimation anomalies", "topics": [ "poseFix" ] }, { "page": "poseLengthCorrect", "title": "Standardise segment lengths (camera-distance correction)", "topics": [ "poseLengthCorrect" ] }, { "page": "predictiveSimulation", "title": "Predictive simulation: minimal-effort optimal control", "topics": [ "predictiveSimulation" ] }, { "page": "pressureAsymmetry", "title": "Compare left and right plantar pressure", "topics": [ "pressureAsymmetry" ] }, { "page": "pressureMovie", "title": "Construct a plantar-pressure movie", "topics": [ "pressureMovie" ] }, { "page": "pressureTimeIntegral", "title": "Calculate the plantar pressure-time integral", "topics": [ "pressureTimeIntegral" ] }, { "page": "print.ASFSkeleton", "title": "Print method for ASFSkeleton objects", "topics": [ "print.ASFSkeleton" ] }, { "page": "print.benchmark_agreement", "title": "Print benchmark agreement summary", "topics": [ "print.benchmark_agreement" ] }, { "page": "print.benchmark_manifest_validation", "title": "Print benchmark manifest validation result", "topics": [ "print.benchmark_manifest_validation" ] }, { "page": "print.benchmark_suite", "title": "Print benchmark suite summary", "topics": [ "print.benchmark_suite" ] }, { "page": "print.detected_events", "title": "Print method for detected events", "topics": [ "print.detected_events" ] }, { "page": "print.dtw_clustering", "title": "Print DTW clustering result", "topics": [ "print.dtw_clustering" ] }, { "page": "print.dtw_result", "title": "Print DTW result", "topics": [ "print.dtw_result" ] }, { "page": "print.forceplate_analysis", "title": "Print a forceplate analysis summary", "topics": [ "print.forceplate_analysis" ] }, { "page": "print.forceplate_analysis_multi", "title": "Print a multi-plate forceplate analysis summary", "topics": [ "print.forceplate_analysis_multi" ] }, { "page": "print.gait_parameters", "title": "Print gait parameters", "topics": [ "print.gait_parameters" ] }, { "page": "print.mocap_quickstart", "title": "Print a quick-start summary", "topics": [ "print.mocap_quickstart" ] }, { "page": "print.mocap_readiness", "title": "Print a MoCap readiness report", "topics": [ "print.mocap_readiness" ] }, { "page": "print.multi_trial_phases", "title": "Print method for multi-trial phases", "topics": [ "print.multi_trial_phases" ] }, { "page": "print.segmented_phases", "title": "Print method for segmented phases", "topics": [ "print.segmented_phases" ] }, { "page": "print.SkeletonModel", "title": "Print a SkeletonModel object", "topics": [ "print.SkeletonModel" ] }, { "page": "print.waveform_pca", "title": "Print waveform PCA result", "topics": [ "print.waveform_pca" ] }, { "page": "print.waveform_umap", "title": "Print waveform UMAP result", "topics": [ "print.waveform_umap" ] }, { "page": "processEMG", "title": "Process EMG for biomechanics workflows", "topics": [ "processEMG" ] }, { "page": "projectTo2D", "title": "Project 3D coordinates to a 2D plane", "topics": [ "projectTo2D" ] }, { "page": "promCondition", "title": "Condition a ProMP on a via-point", "topics": [ "promCondition" ] }, { "page": "promFit", "title": "Fit a Probabilistic Movement Primitive to demonstrations", "topics": [ "promFit" ] }, { "page": "quaternionToEuler", "title": "Convert quaternion to Euler angles", "topics": [ "quaternionToEuler" ] }, { "page": "quickStartMoCap", "title": "Run a one-command beginner workflow", "topics": [ "quickStartMoCap" ] }, { "page": "rateOfForceDevelopment", "title": "Rate of force development", "topics": [ "rateOfForceDevelopment" ] }, { "page": "reachingKinematics", "title": "Reaching kinematics report for a PhysioExperiment", "topics": [ "reachingKinematics" ] }, { "page": "readAMC", "title": "Read AMC Motion Capture File (.amc)", "topics": [ "readAMC" ] }, { "page": "readASF", "title": "Read ASF Skeleton Definition File (.asf)", "topics": [ "readASF" ] }, { "page": "readBVH", "title": "Read BVH Skeleton Animation File (.bvh)", "topics": [ "readBVH" ] }, { "page": "readC3D", "title": "Read C3D Motion Capture File", "topics": [ "readC3D" ] }, { "page": "readDeepLabCut", "title": "Read DeepLabCut output", "topics": [ "readDeepLabCut" ] }, { "page": "readGaitRec", "title": "Read GaitRec Dataset", "topics": [ "readGaitRec" ] }, { "page": "readMediaPipe", "title": "Read MediaPipe landmark output", "topics": [ "readMediaPipe" ] }, { "page": "readMoCapAuto", "title": "Read motion-capture files with automatic format detection", "topics": [ "readMoCapAuto" ] }, { "page": "readMoCapCSV", "title": "Read Motion Capture CSV Data", "topics": [ "readMoCapCSV" ] }, { "page": "readMOT", "title": "Read OpenSim Motion File (.mot)", "topics": [ "readMOT" ] }, { "page": "readOpenCap", "title": "Read Data from OpenCap Cloud Platform", "topics": [ "readOpenCap" ] }, { "page": "readOpenPose", "title": "Read OpenPose JSON output", "topics": [ "readOpenPose" ] }, { "page": "readOpenSimOutputs", "title": "Read OpenSim Output Files", "topics": [ "readOpenSimOutputs" ] }, { "page": "readPressureFrame", "title": "Read a plantar-pressure ASCII export", "topics": [ "readPressureFrame" ] }, { "page": "readSTO", "title": "Read OpenSim Storage File (.sto)", "topics": [ "readSTO" ] }, { "page": "readTRC", "title": "Read OpenSim TRC File (.trc)", "topics": [ "readTRC" ] }, { "page": "readVenus3D", "title": "Read Venus3D CSV Data", "topics": [ "readVenus3D" ] }, { "page": "rectifyEMG", "title": "Rectify EMG signals", "topics": [ "rectifyEMG" ] }, { "page": "recurrenceQuantification", "title": "Recurrence quantification analysis (RQA)", "topics": [ "recurrenceQuantification" ] }, { "page": "reflexThreshold", "title": "Velocity-dependent reflex threshold", "topics": [ "reflexThreshold" ] }, { "page": "regionalLoading", "title": "Summarize plantar loading by anatomical region", "topics": [ "regionalLoading" ] }, { "page": "removeGravity", "title": "Remove gravity from accelerometer data", "topics": [ "removeGravity" ] }, { "page": "reportGaps", "title": "Report summary statistics for detected gaps", "topics": [ "reportGaps" ] }, { "page": "resampleSignal", "title": "Resample signal assays to a new sampling rate", "topics": [ "resampleSignal" ] }, { "page": "resampleVector", "title": "Resample a single numeric vector", "topics": [ "resampleVector" ] }, { "page": "run_opensim_toolchain", "title": "Run OpenSim CLI Toolchain via PhysioOpenSim", "topics": [ "run_opensim_toolchain" ] }, { "page": "runBenchmarkSuite", "title": "Run a benchmark suite from a manifest", "topics": [ "runBenchmarkSuite" ] }, { "page": "runCMC", "title": "Run Computed Muscle Control (CMC) via OpenSim", "topics": [ "runCMC" ] }, { "page": "runOpenSimFromMarkers", "title": "Run the local OpenSim toolchain from a model and marker file", "topics": [ "runOpenSimFromMarkers" ] }, { "page": "runOpenSimFromOpenCap", "title": "Run the local OpenSim toolchain directly from an OpenCap session", "topics": [ "runOpenSimFromOpenCap" ] }, { "page": "runRRA", "title": "Run Residual Reduction Algorithm (RRA) via OpenSim", "topics": [ "runRRA" ] }, { "page": "runStaticOptimization", "title": "Run static optimization (OpenSim, or a pure-R fallback)", "topics": [ "runStaticOptimization" ] }, { "page": "sampleEntropy", "title": "Sample entropy (Richman & Moorman)", "topics": [ "sampleEntropy" ] }, { "page": "savgolFilter", "title": "Savitzky-Golay filter for smoothing and differentiation", "topics": [ "savgolFilter" ] }, { "page": "scaleBodyModel", "title": "Scale a body model from marker-measured segment lengths", "topics": [ "scaleBodyModel" ] }, { "page": "scalePlanarModel", "title": "Scale a planar chain model from a static pose", "topics": [ "scalePlanarModel" ] }, { "page": "scaleSegmentModel", "title": "Scale a de Leva segment inertia model to a subject", "topics": [ "scaleSegmentModel" ] }, { "page": "schema_balance", "title": "Pre-built Balance Schema", "topics": [ "schema_balance" ] }, { "page": "schema_cutting", "title": "Pre-built Cutting/Change of Direction Schema", "topics": [ "schema_cutting" ] }, { "page": "schema_cycling", "title": "Pre-built Cycling Schema", "topics": [ "schema_cycling" ] }, { "page": "schema_gait", "title": "Pre-built Gait Cycle Schema", "topics": [ "schema_gait" ] }, { "page": "schema_jump", "title": "Pre-built Jump Schema", "topics": [ "schema_jump" ] }, { "page": "schema_running", "title": "Pre-built Running Schema", "topics": [ "schema_running" ] }, { "page": "schema_throw", "title": "Pre-built Throwing Schema", "topics": [ "schema_throw" ] }, { "page": "segmentCohortCycles", "title": "Segment cohort recordings while preserving subject and session identity", "topics": [ "segmentCohortCycles" ] }, { "page": "segmentMultimodalCycles", "title": "Segment matched cycles on native modality sampling grids", "topics": [ "segmentMultimodalCycles" ] }, { "page": "segmentParameters", "title": "Get body segment inertial parameters (BSIP)", "topics": [ "segmentParameters" ] }, { "page": "segmentPhases", "title": "Segment data into phases", "topics": [ "segmentPhases" ] }, { "page": "sensoryOrganizationTest", "title": "Sensory Organization Test (SOT) equilibrium and sensory-ratio scoring", "topics": [ "sensoryOrganizationTest" ] }, { "page": "SkeletonModel", "title": "Create a SkeletonModel object", "topics": [ "SkeletonModel" ] }, { "page": "sparc", "title": "Spectral Arc Length (SPARC) movement smoothness", "topics": [ "sparc" ] }, { "page": "stabilogramDiffusion", "title": "Stabilogram diffusion analysis (Collins & De Luca 1993)", "topics": [ "stabilogramDiffusion" ] }, { "page": "staticOptimizationR", "title": "Pure-R static optimization of muscle activations", "topics": [ "staticOptimizationR" ] }, { "page": "strapdownIntegrate", "title": "ZUPT-aided strapdown integration of world-frame acceleration", "topics": [ "strapdownIntegrate" ] }, { "page": "summarizeCycleFeatures", "title": "Summarize matched cycles into keyed feature blocks", "topics": [ "summarizeCycleFeatures" ] }, { "page": "summarizeGaitParameters", "title": "Summarise gait parameters", "topics": [ "summarizeGaitParameters" ] }, { "page": "swayMetrics", "title": "Posturographic center-of-pressure sway metrics (Prieto 1996)", "topics": [ "swayMetrics" ] }, { "page": "symmetryIndex", "title": "Compute bilateral symmetry index", "topics": [ "symmetryIndex" ] }, { "page": "synchronizeSignals", "title": "Synchronize multiple PhysioExperiment objects", "topics": [ "synchronizeSignals" ] }, { "page": "tardieuScore", "title": "Tardieu score: R1, R2 and the dynamic component", "topics": [ "tardieuScore" ] }, { "page": "tardieuStretch", "title": "Detect the spastic catch on a single passive stretch", "topics": [ "tardieuStretch" ] }, { "page": "TaskSchema", "title": "Create a Task Schema", "topics": [ "TaskSchema" ] }, { "page": "timeDelayEmbed", "title": "Time-delay phase-space embedding", "topics": [ "timeDelayEmbed" ] }, { "page": "timeToPeakTorque", "title": "Time to peak torque", "topics": [ "timeToPeakTorque" ] }, { "page": "timeToPeakVelocity", "title": "Time to peak reaching velocity", "topics": [ "timeToPeakVelocity" ] }, { "page": "toleranceNoiseCovariation", "title": "Tolerance-Noise-Covariation (TNC) decomposition of result error", "topics": [ "toleranceNoiseCovariation" ] }, { "page": "trackMarkers", "title": "Track Markers Across Frames", "topics": [ "trackMarkers" ] }, { "page": "tremorAmplitude", "title": "Band-limited tremor amplitude (RMS)", "topics": [ "tremorAmplitude" ] }, { "page": "tremorMetrics", "title": "Tremor metrics (frequency + amplitude, with a task tag)", "topics": [ "tremorMetrics" ] }, { "page": "tremorSpectrum", "title": "Tremor power spectrum and dominant frequency", "topics": [ "tremorSpectrum" ] }, { "page": "trunkCompensation", "title": "Trunk compensation during reaching", "topics": [ "trunkCompensation" ] }, { "page": "uncontrolledManifold", "title": "Uncontrolled Manifold (UCM) analysis of motor variability", "topics": [ "uncontrolledManifold" ] }, { "page": "validateBenchmarkManifest", "title": "Validate a benchmark manifest", "topics": [ "validateBenchmarkManifest" ] }, { "page": "validateSchema", "title": "Validate a TaskSchema", "topics": [ "validateSchema" ] }, { "page": "vectorAngle", "title": "Angle between two 3D vectors", "topics": [ "vectorAngle" ] }, { "page": "vectorCoding", "title": "Vector coding (coupling angle) between two joints", "topics": [ "vectorCoding" ] }, { "page": "waveformPCA", "title": "PCA for waveform data", "topics": [ "waveformPCA" ] }, { "page": "waveformTSNE", "title": "t-SNE embedding for waveform data", "topics": [ "waveformTSNE" ] }, { "page": "waveformUMAP", "title": "UMAP embedding for waveform data", "topics": [ "waveformUMAP" ] }, { "page": "writeBenchmarkManifest", "title": "Write a benchmark manifest template to CSV", "topics": [ "writeBenchmarkManifest" ] }, { "page": "writeC3D", "title": "Write a C3D Motion Capture File", "topics": [ "writeC3D" ] }, { "page": "writeMOT", "title": "Write an OpenSim Motion File (.mot)", "topics": [ "writeMOT" ] }, { "page": "writeTRC", "title": "Write an OpenSim TRC File (.trc)", "topics": [ "writeTRC" ] } ], "_readme": "https://github.com/x-biosignal/PhysioMoCap/raw/HEAD/README.md", "_rundeps": [ "abind", "Biobase", "BiocGenerics", "cli", "cpp11", "DelayedArray", "digest", 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