{ "_id": "6a1f2756b401979e73422667", "Package": "PhysioMoCap", "Title": "Motion Capture and Biomechanics Analysis for PhysioExperiment\nObjects", "Version": "0.2.0", "Authors@R": "person(given = \"Yusuke\",\nfamily = \"Matsui\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mail.to.matsui@gmail.com\")", "Description": "Provides motion capture, pose estimation, and\nbiomechanical simulation analysis for PhysioExperiment objects.\nIncludes I/O for C3D, Venus3D, GaitRec, OpenPose, DeepLabCut,\nMediaPipe, BVH, ASF/AMC, OpenSim, and generic CSV formats.\nProvides marker tracking (Hungarian algorithm), signal\nfiltering, numerical differentiation, resampling, center of\nmass calculation, gait parameters, clinical statistics (ICC,\nSEM, MDC, Bland-Altman), movement phase segmentation, dynamic\ntime warping, movement normalization, functional PCA,\nforce-plate kinetics (GRF filtering, COP, loading rate,\nimpulse), planar inverse dynamics (joint moments/power), EMG\nintegration (rectification, RMS envelope, MVC normalization),\ngait/running/jump task schemas, OpenSim workflow integration,\nand biomechanics-specific visualization.", "VignetteBuilder": "knitr", "License": "MIT + file LICENSE", "URL": "https://github.com/matsui-lab/PhysioExperiment", "BugReports": "https://github.com/matsui-lab/PhysioExperiment/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Collate": "'class-TaskSchema.R' 'schemas-prebuilt.R' 'mocap-skeleton.R'\n'mocap-angles.R' 'mocap-gaps.R' 'mocap-imu.R'\n'mocap-tracking.R' 'io-openpose.R' 'io-opensim.R' 'io-c3d.R'\n'io-bvh.R' 'io-deeplabcut.R' 'io-mediapipe.R' 'io-opencap.R'\n'ops-events.R' 'ops-phases.R' 'ops-normalize.R' 'ops-dtw.R'\n'ops-dimred.R' 'stats-fda.R' 'opensim-integration.R'\n'vis-biomech.R' 'vis-movement.R' 'vis-skeleton.R'\n'biomech-com.R' 'io-asfamc.R' 'io-csv.R' 'io-gaitrec.R'\n'io-venus3d.R' 'ops-filter.R' 'ops-derivatives.R'\n'ops-resample.R' 'stats-clinical.R' 'stats-gait.R'\n'kinetics-forceplate.R' 'kinetics-inverse-dynamics.R'\n'mocap-emg.R' 'user-onboarding.R' 'benchmark-validation.R'\n'zzz.R'", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://x-biosignal.r-universe.dev", "Date/Publication": "2026-03-16 11:31:37 UTC", "RemoteUrl": "https://github.com/x-biosignal/PhysioMoCap", "RemoteRef": "HEAD", "RemoteSha": "7047593a8caad70fa3804c733be7b31b759fea92", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 05:34:28 UTC", "User": "root" }, "Author": "Yusuke Matsui [aut, cre]", "Maintainer": "Yusuke Matsui ", "MD5sum": "15c0c9f89397b74bdf938a55459976c0", "_user": "x-biosignal", "_type": "src", "_file": "PhysioMoCap_0.2.0.tar.gz", "_fileid": "954146a3a8f84834d9f211f797fda21b392ddec6ae32fadfc4c318eefba7a19a", "_filesize": 922385, "_sha256": "954146a3a8f84834d9f211f797fda21b392ddec6ae32fadfc4c318eefba7a19a", "_created": "2026-05-16T05:34:28.000Z", "_published": "2026-06-02T18:56:22.799Z", "_distro": "noble", "_jobs": [ { "job": 79148493537, "time": 315, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7030892035" }, { "job": 79148493815, "time": 303, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7030890573" }, { "job": 79148493557, "time": 253, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7030884767" }, { "job": 79148493869, "time": 235, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7030882666" }, { "job": 79148493433, "time": 274, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7030856112" }, { "job": 79148492874, "time": 144, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367065807" }, { "job": 79148493535, "time": 274, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7030887257" }, { "job": 79148493529, "time": 296, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7030889873" }, { "job": 79148493892, "time": 285, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7030888546" } ], "_buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/x-biosignal/PhysioMoCap", "_commit": { "id": "7047593a8caad70fa3804c733be7b31b759fea92", "author": "Yusuke Matsui ", "committer": "Yusuke Matsui ", "message": "docs: Add comprehensive README\n", "time": 1773660697 }, "_maintainer": { "name": "Yusuke Matsui", "email": "mail.to.matsui@gmail.com", "login": "ymatts", "uuid": 5744286 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2", "role": "Depends" }, { "package": "PhysioCore", "role": "Depends" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "PhysioIO", "role": "Suggests" }, { "package": "signal", "role": "Suggests" }, { "package": "signalIO", "role": "Suggests" }, { "package": "uwot", "role": "Suggests" }, { "package": "Rtsne", "role": "Suggests" }, { "package": "c3dr", "role": "Suggests" }, { "package": "clue", "role": "Suggests" }, { "package": "rhdf5", "role": "Suggests" }, { "package": "httr", "role": "Suggests" }, { "package": "withr", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.2.0", "role": "Suggests" } ], "_owner": "x-biosignal", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-12", "n": 2 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "ymatts", "count": 2, "uuid": 5744286 } ], "_userbio": { "uuid": 268545536, "type": "organization", "name": "x-biosignal" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PhysioMoCap" }, "_devurl": "https://github.com/matsui-lab/physioexperiment", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/PhysioMoCap.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "alignEMGtoMoCap", "analyzeForcePlate", "analyzeForcePlatePE", "assessMoCapReadiness", "batch_analyze_opensim", "batchNormalize", "benchmarkAgreement", "benchmarkManifestTemplate", "blandAltman", "butterworthFilter", "calculateCOM", "calculateCOP", "calculateGaitParameters", "calculateJointAngles", "calculateSegmentCOM", "calculateStepSymmetry", "calibrateIMU", "cohensD", "combineTrials", "computeAcceleration", "computeImpulse", "computeJerk", "computeJointPower", "computeLoadingRate", "computeRMSEnvelope", "computeSpeed", "computeVelocity", "correctSwaps", "create_schema_from_opensim", "createBenchmarkExample", "defaultBenchmarkThresholds", "define_skeleton", "demoMoCapData", "detectEvents", "detectForcePlateContacts", "detectGaps", "detectSwaps", "differentiate", "dtwAverage", "dtwClustering", "dtwDistance", "dtwDistanceMatrix", "dtwWarp", "estimateOrientation", "estimateSegmentInertia", "etaSquared", "eulerToQuaternion", "Event", "extractPhase", "extractWaveformFeatures", "fillGaps", "fillGapsLinear", "fillGapsSpline", "filterGRF", "filterSignals", "fPCA", "get_bone_connections", "get_limb_pairs", "get_segment_lengths", "getEvent", "getEventNames", "getPhase", "getPhaseColors", "getPhaseData", "getPhaseNames", "getSchema", "hasValidPhases", "icc", "integrateEMGMoCap", "inverseDynamics2D", "inverseDynamics3D", "listSchemas", "manualEvents", "mdc", "movingAverage", "normalizedTimeAxis", "normalizeEMG", "normalizeMovement", "Phase", "phaseDurations", "phaseRatios", "phaseTiming", "plotCorrelationMatrix", "plotCycle", "plotDTW", "plotEffectSizeForest", "plotFPCA", "plotGaitCycle", "plotGroupComparison", "plotMultiPanel", "plotPCAScatter", "plotPCAVariance", "plotPhaseDurations", "plotPhasePortrait", "plotSkeleton", "plotSkeleton3D", "plotSkeletonOverlay", "plotSkeletonSequence", "plotSpaghetti", "plotSymmetry", "plotTrajectory", "plotUMAP", "plotWaveformComparison", "processEMG", "projectTo2D", "quaternionToEuler", "quickStartMoCap", "readAMC", "readASF", "readBVH", "readC3D", "readDeepLabCut", "readGaitRec", "readMediaPipe", "readMoCapAuto", "readMoCapCSV", "readMOT", "readOpenCap", "readOpenPose", "readOpenSimOutputs", "readSTO", "readTRC", "readVenus3D", "reconstructFPCA", "rectifyEMG", "registerCurves", "removeGravity", "reportGaps", "resampleSignal", "resampleVector", "run_opensim_toolchain", "runBenchmarkSuite", "savgolFilter", "schema_balance", "schema_cutting", "schema_cycling", "schema_gait", "schema_jump", "schema_running", "schema_throw", "segmentParameters", "segmentPhases", "sem", "SkeletonModel", "summarizeGaitParameters", "symmetryIndex", "synchronizeSignals", "TaskSchema", "trackMarkers", "validateBenchmarkManifest", "validateSchema", "vectorAngle", "waveformPCA", "waveformTSNE", "waveformUMAP", "writeBenchmarkManifest" ], "_help": [ { "page": "alignEMGtoMoCap", "title": "Align EMG to motion-capture sampling grid", "topics": [ "alignEMGtoMoCap" ] }, { "page": "analyzeForcePlate", "title": "Run complete force-plate analysis", "topics": [ "analyzeForcePlate" ] }, { "page": "analyzeForcePlatePE", "title": "Analyze force-plate signals from a PhysioExperiment object", "topics": [ "analyzeForcePlatePE" ] }, { "page": "assessMoCapReadiness", "title": "Assess readiness of a MoCap dataset for downstream analysis", "topics": [ "assessMoCapReadiness" ] }, { "page": "batch_analyze_opensim", "title": "Batch analyze OpenSim session data", "topics": [ "batch_analyze_opensim" ] }, { "page": "batchNormalize", "title": "Batch normalize multiple trials", "topics": [ "batchNormalize" ] }, { "page": "benchmarkAgreement", "title": "Compute agreement metrics against a reference signal table", "topics": [ "benchmarkAgreement" ] }, { "page": "benchmarkManifestTemplate", "title": "Create a benchmark manifest template", "topics": [ "benchmarkManifestTemplate" ] }, { "page": "blandAltman", "title": "Bland-Altman Analysis for Method Agreement", "topics": [ "blandAltman" ] }, { "page": "butterworthFilter", "title": "Apply a Butterworth filter to numeric data", "topics": [ "butterworthFilter" ] }, { "page": "calculateCOM", "title": "Calculate whole-body center of mass from marker positions", "topics": [ "calculateCOM" ] }, { "page": "calculateCOP", "title": "Calculate center of pressure (COP) from force-plate data", "topics": [ "calculateCOP" ] }, { "page": "calculateGaitParameters", "title": "Calculate gait temporal-spatial parameters", "topics": [ "calculateGaitParameters" ] }, { "page": "calculateJointAngles", "title": "Calculate joint angles from marker positions", "topics": [ "calculateJointAngles" ] }, { "page": "calculateSegmentCOM", "title": "Calculate per-segment centers of mass", "topics": [ "calculateSegmentCOM" ] }, { "page": "calculateStepSymmetry", "title": "Calculate step symmetry from gait parameters", "topics": [ "calculateStepSymmetry" ] }, { "page": "calibrateIMU", "title": "Calibrate IMU from static data", "topics": [ "calibrateIMU" ] }, { "page": "cohensD", "title": "Cohen's d Effect Size", "topics": [ "cohensD" ] }, { "page": "combineTrials", "title": "Combine multiple trials with segmented phases", "topics": [ "combineTrials" ] }, { "page": "computeAcceleration", "title": "Compute acceleration from position or velocity data", "topics": [ "computeAcceleration" ] }, { "page": "computeImpulse", "title": "Compute vertical impulse from GRF", "topics": [ "computeImpulse" ] }, { "page": "computeJerk", "title": "Compute jerk from position data", "topics": [ "computeJerk" ] }, { "page": "computeJointPower", "title": "Compute joint power from moment and angular velocity", "topics": [ "computeJointPower" ] }, { "page": "computeLoadingRate", "title": "Compute vertical loading rate from GRF", "topics": [ "computeLoadingRate" ] }, { "page": "computeRMSEnvelope", "title": "Compute moving RMS envelope of EMG", "topics": [ "computeRMSEnvelope" ] }, { "page": "computeSpeed", "title": "Compute scalar speed from velocity", "topics": [ "computeSpeed" ] }, { "page": "computeVelocity", "title": "Compute velocity from position data", "topics": [ "computeVelocity" ] }, { "page": "correctSwaps", "title": "Correct Marker Label Swaps", "topics": [ "correctSwaps" ] }, { "page": "create_schema_from_opensim", "title": "Create a TaskSchema from OpenSim model for gait analysis", "topics": [ "create_schema_from_opensim" ] }, { "page": "createBenchmarkExample", "title": "Create a synthetic benchmark dataset bundle", "topics": [ "createBenchmarkExample" ] }, { "page": "defaultBenchmarkThresholds", "title": "Get default benchmark thresholds", "topics": [ "defaultBenchmarkThresholds" ] }, { "page": "define_skeleton", "title": "Create a pre-defined skeleton model", "topics": [ "define_skeleton" ] }, { "page": "demoMoCapData", "title": "Create a beginner-friendly demo dataset", "topics": [ "demoMoCapData" ] }, { "page": "detectEvents", "title": "Detect events in movement data", "topics": [ "detectEvents" ] }, { "page": "detectForcePlateContacts", "title": "Detect contact windows for one or more force plates", "topics": [ "detectForcePlateContacts" ] }, { "page": "detectGaps", "title": "Detect gaps (contiguous NA runs) in assay data", "topics": [ "detectGaps" ] }, { "page": "detectSwaps", "title": "Detect Marker Label Swaps", "topics": [ "detectSwaps" ] }, { "page": "differentiate", "title": "Differentiate a numeric vector or matrix", "topics": [ "differentiate" ] }, { "page": "dtwAverage", "title": "DTW Barycenter Averaging (DBA)", "topics": [ "dtwAverage" ] }, { "page": "dtwClustering", "title": "DTW-based clustering", "topics": [ "dtwClustering" ] }, { "page": "dtwDistance", "title": "Dynamic Time Warping (DTW) for Biomechanics", "topics": [ "dtwDistance" ] }, { "page": "dtwDistanceMatrix", "title": "Compute DTW distance matrix", "topics": [ "dtwDistanceMatrix" ] }, { "page": "dtwWarp", "title": "Warp a waveform using DTW alignment", "topics": [ "dtwWarp" ] }, { "page": "estimateOrientation", "title": "Estimate orientation from IMU sensors using sensor fusion", "topics": [ "estimateOrientation" ] }, { "page": "estimateSegmentInertia", "title": "Estimate segment inertial properties for lower-limb inverse dynamics", "topics": [ "estimateSegmentInertia" ] }, { "page": "etaSquared", "title": "Eta-Squared Effect Size", "topics": [ "etaSquared" ] }, { "page": "eulerToQuaternion", "title": "Convert Euler angles to quaternion", "topics": [ "eulerToQuaternion" ] }, { "page": "Event", "title": "Create an Event definition", "topics": [ "Event" ] }, { "page": "extractPhase", "title": "Extract a single phase from segmented data", "topics": [ "extractPhase" ] }, { "page": "extractWaveformFeatures", "title": "Dimensionality Reduction for Biomechanics", "topics": [ "extractWaveformFeatures" ] }, { "page": "fillGaps", "title": "Fill gaps in motion capture data", "topics": [ "fillGaps" ] }, { "page": "fillGapsLinear", "title": "Linear interpolation for a single vector", "topics": [ "fillGapsLinear" ] }, { "page": "fillGapsSpline", "title": "Spline interpolation for a single vector", "topics": [ "fillGapsSpline" ] }, { "page": "filterGRF", "title": "Low-pass filter ground reaction force data", "topics": [ "filterGRF" ] }, { "page": "filterSignals", "title": "Filter signals in a PhysioExperiment object", "topics": [ "filterSignals" ] }, { "page": "fPCA", "title": "Functional Data Analysis (FDA) for Biomechanics", "topics": [ "fPCA" ] }, { "page": "get_bone_connections", "title": "Get bone connections from a skeleton", "topics": [ "get_bone_connections" ] }, { "page": "get_limb_pairs", "title": "Get left/right limb pairs for symmetry analysis", "topics": [ "get_limb_pairs" ] }, { "page": "get_segment_lengths", "title": "Compute segment lengths from a PhysioExperiment and skeleton", "topics": [ "get_segment_lengths" ] }, { "page": "getEvent", "title": "Get an event by name from a TaskSchema", "topics": [ "getEvent" ] }, { "page": "getEventNames", "title": "Get event names from a TaskSchema", "topics": [ "getEventNames" ] }, { "page": "getPhase", "title": "Get a phase by name from a TaskSchema", "topics": [ "getPhase" ] }, { "page": "getPhaseColors", "title": "Get phase colors from a TaskSchema", "topics": [ "getPhaseColors" ] }, { "page": "getPhaseData", "title": "Get data for all phases as a list of matrices", "topics": [ "getPhaseData" ] }, { "page": "getPhaseNames", "title": "Get phase names from a TaskSchema", "topics": [ "getPhaseNames" ] }, { "page": "getSchema", "title": "Get a pre-built schema by name", "topics": [ "getSchema" ] }, { "page": "hasValidPhases", "title": "Check if all phases are valid", "topics": [ "hasValidPhases" ] }, { "page": "icc", "title": "Intraclass Correlation Coefficient (ICC)", "topics": [ "icc" ] }, { "page": "integrateEMGMoCap", "title": "Integrate EMG and MoCap signals onto a common timeline", "topics": [ "integrateEMGMoCap" ] }, { "page": "inverseDynamics2D", "title": "Compute 2D lower-limb joint moments with inverse dynamics", "topics": [ "inverseDynamics2D" ] }, { "page": "inverseDynamics3D", "title": "Compute 3D lower-limb joint moments with inverse dynamics", "topics": [ "inverseDynamics3D" ] }, { "page": "listSchemas", "title": "Get list of all pre-built schemas", "topics": [ "listSchemas" ] }, { "page": "manualEvents", "title": "Manually specify event times", "topics": [ "manualEvents" ] }, { "page": "mdc", "title": "Minimal Detectable Change (MDC)", "topics": [ "mdc" ] }, { "page": "movingAverage", "title": "Simple moving average filter", "topics": [ "movingAverage" ] }, { "page": "normalizedTimeAxis", "title": "Time axis for normalized data", "topics": [ "normalizedTimeAxis" ] }, { "page": "normalizeEMG", "title": "Normalize EMG by MVC or peak", "topics": [ "normalizeEMG" ] }, { "page": "normalizeMovement", "title": "Normalize movement data", "topics": [ "normalizeMovement" ] }, { "page": "Phase", "title": "Create a Phase definition", "topics": [ "Phase" ] }, { "page": "phaseDurations", "title": "Get phase durations", "topics": [ "phaseDurations" ] }, { "page": "phaseRatios", "title": "Calculate phase ratios", "topics": [ "phaseRatios" ] }, { "page": "phaseTiming", "title": "Get phase timing information", "topics": [ "phaseTiming" ] }, { "page": "plotCorrelationMatrix", "title": "Plot correlation matrix heatmap", "topics": [ "plotCorrelationMatrix" ] }, { "page": "plotCycle", "title": "Plot normalized movement cycle", "topics": [ "plotCycle" ] }, { "page": "plotDTW", "title": "Plot DTW alignment", "topics": [ "plotDTW" ] }, { "page": "plotEffectSizeForest", "title": "Plot effect size forest plot", "topics": [ "plotEffectSizeForest" ] }, { "page": "plotFPCA", "title": "Plot fPCA results", "topics": [ "plotFPCA" ] }, { "page": "plotGaitCycle", "title": "Plot gait cycle normalized waveforms", "topics": [ "plotGaitCycle" ] }, { "page": "plotGroupComparison", "title": "Plot group comparison with task context", "topics": [ "plotGroupComparison" ] }, { "page": "plotMultiPanel", "title": "Plot multi-panel movement data", "topics": [ "plotMultiPanel" ] }, { "page": "plotPCAScatter", "title": "Plot PCA scatter", "topics": [ "plotPCAScatter" ] }, { "page": "plotPCAVariance", "title": "Plot PCA variance explained", "topics": [ "plotPCAVariance" ] }, { "page": "plotPhaseDurations", "title": "Plot phase duration comparison", "topics": [ "plotPhaseDurations" ] }, { "page": "plotPhasePortrait", "title": "Plot phase portrait", "topics": [ "plotPhasePortrait" ] }, { "page": "plotSkeleton", "title": "Plot a 2D stick-figure skeleton", "topics": [ "plotSkeleton" ] }, { "page": "plotSkeleton3D", "title": "Plot a skeleton frame in pseudo-3D", "topics": [ "plotSkeleton3D" ] }, { "page": "plotSkeletonOverlay", "title": "Plot overlaid skeleton frames", "topics": [ "plotSkeletonOverlay" ] }, { "page": "plotSkeletonSequence", "title": "Plot a sequence of skeleton frames", "topics": [ "plotSkeletonSequence" ] }, { "page": "plotSpaghetti", "title": "Plot spaghetti plot (all subjects with mean)", "topics": [ "plotSpaghetti" ] }, { "page": "plotSymmetry", "title": "Plot symmetry comparison (left vs right)", "topics": [ "plotSymmetry" ] }, { "page": "plotTrajectory", "title": "Plot movement trajectory (2D)", "topics": [ "plotTrajectory" ] }, { "page": "plotUMAP", "title": "Plot UMAP embedding", "topics": [ "plotUMAP" ] }, { "page": "plotWaveformComparison", "title": "Biomechanics-specific Visualization Functions", "topics": [ "plotWaveformComparison" ] }, { "page": "print.ASFSkeleton", "title": "Print method for ASFSkeleton objects", "topics": [ "print.ASFSkeleton" ] }, { "page": "print.benchmark_agreement", "title": "Print benchmark agreement summary", "topics": [ "print.benchmark_agreement" ] }, { "page": "print.benchmark_manifest_validation", "title": "Print benchmark manifest validation result", "topics": [ "print.benchmark_manifest_validation" ] }, { "page": "print.benchmark_suite", "title": "Print benchmark suite summary", "topics": [ "print.benchmark_suite" ] }, { "page": "print.detected_events", "title": "Print method for detected events", "topics": [ "print.detected_events" ] }, { "page": "print.dtw_clustering", "title": "Print DTW clustering result", "topics": [ "print.dtw_clustering" ] }, { "page": "print.dtw_result", "title": "Print DTW result", "topics": [ "print.dtw_result" ] }, { "page": "print.forceplate_analysis", "title": "Print a forceplate analysis summary", "topics": [ "print.forceplate_analysis" ] }, { "page": "print.forceplate_analysis_multi", "title": "Print a multi-plate forceplate analysis summary", "topics": [ "print.forceplate_analysis_multi" ] }, { "page": "print.fpca_result", "title": "Print fPCA result", "topics": [ "print.fpca_result" ] }, { "page": "print.gait_parameters", "title": "Print gait parameters", "topics": [ "print.gait_parameters" ] }, { "page": "print.mocap_quickstart", "title": "Print a quick-start summary", "topics": [ "print.mocap_quickstart" ] }, { "page": "print.mocap_readiness", "title": "Print a MoCap readiness report", "topics": [ "print.mocap_readiness" ] }, { "page": "print.multi_trial_phases", "title": "Print method for multi-trial phases", "topics": [ "print.multi_trial_phases" ] }, { "page": "print.segmented_phases", "title": "Print method for segmented phases", "topics": [ "print.segmented_phases" ] }, { "page": "print.SkeletonModel", "title": "Print a SkeletonModel object", "topics": [ "print.SkeletonModel" ] }, { "page": "print.waveform_pca", "title": "Print waveform PCA result", "topics": [ "print.waveform_pca" ] }, { "page": "print.waveform_umap", "title": "Print waveform UMAP result", "topics": [ "print.waveform_umap" ] }, { "page": "processEMG", "title": "Process EMG for biomechanics workflows", "topics": [ "processEMG" ] }, { "page": "projectTo2D", "title": "Project 3D coordinates to a 2D plane", "topics": [ "projectTo2D" ] }, { "page": "quaternionToEuler", "title": "Convert quaternion to Euler angles", "topics": [ "quaternionToEuler" ] }, { "page": "quickStartMoCap", "title": "Run a one-command beginner workflow", "topics": [ "quickStartMoCap" ] }, { "page": "readAMC", "title": "Read AMC Motion Capture File (.amc)", "topics": [ "readAMC" ] }, { "page": "readASF", "title": "Read ASF Skeleton Definition File (.asf)", "topics": [ "readASF" ] }, { "page": "readBVH", "title": "Read BVH Skeleton Animation File (.bvh)", "topics": [ "readBVH" ] }, { "page": "readC3D", "title": "Read C3D Motion Capture File", "topics": [ "readC3D" ] }, { "page": "readDeepLabCut", "title": "Read DeepLabCut output", "topics": [ "readDeepLabCut" ] }, { "page": "readMediaPipe", "title": "Read MediaPipe landmark output", "topics": [ "readMediaPipe" ] }, { "page": "readMoCapAuto", "title": "Read motion-capture files with automatic format detection", "topics": [ "readMoCapAuto" ] }, { "page": "readMoCapCSV", "title": "Read Motion Capture CSV Data", "topics": [ "readMoCapCSV" ] }, { "page": "readMOT", "title": "Read OpenSim Motion File (.mot)", "topics": [ "readMOT" ] }, { "page": "readOpenCap", "title": "Read Data from OpenCap Cloud Platform", "topics": [ "readOpenCap" ] }, { "page": "readOpenPose", "title": "Read OpenPose JSON output", "topics": [ "readOpenPose" ] }, { "page": "readOpenSimOutputs", "title": "Read OpenSim Output Files", "topics": [ "readOpenSimOutputs" ] }, { "page": "readSTO", "title": "Read OpenSim Storage File (.sto)", "topics": [ "readSTO" ] }, { "page": "readTRC", "title": "Read OpenSim TRC File (.trc)", "topics": [ "readTRC" ] }, { "page": "readVenus3D", "title": "Read Venus3D CSV Data", "topics": [ "readVenus3D" ] }, { "page": "reconstructFPCA", "title": "Reconstruct waveforms from fPCA", "topics": [ "reconstructFPCA" ] }, { "page": "rectifyEMG", "title": "Rectify EMG signals", "topics": [ "rectifyEMG" ] }, { "page": "registerCurves", "title": "Curve registration (time warping)", "topics": [ "registerCurves" ] }, { "page": "removeGravity", "title": "Remove gravity from accelerometer data", "topics": [ "removeGravity" ] }, { "page": "reportGaps", "title": "Report summary statistics for detected gaps", "topics": [ "reportGaps" ] }, { "page": "resampleSignal", "title": "Resample signal assays to a new sampling rate", "topics": [ "resampleSignal" ] }, { "page": "resampleVector", "title": "Resample a single numeric vector", "topics": [ "resampleVector" ] }, { "page": "run_opensim_toolchain", "title": "Run OpenSim CLI Toolchain via PhysioOpenSim", "topics": [ "run_opensim_toolchain" ] }, { "page": "runBenchmarkSuite", "title": "Run a benchmark suite from a manifest", "topics": [ "runBenchmarkSuite" ] }, { "page": "savgolFilter", "title": "Savitzky-Golay filter for smoothing and differentiation", "topics": [ "savgolFilter" ] }, { "page": "schema_balance", "title": "Pre-built Balance Schema", "topics": [ "schema_balance" ] }, { "page": "schema_cutting", "title": "Pre-built Cutting/Change of Direction Schema", "topics": [ "schema_cutting" ] }, { "page": "schema_cycling", "title": "Pre-built Cycling Schema", "topics": [ "schema_cycling" ] }, { "page": "schema_gait", "title": "Pre-built Gait Cycle Schema", "topics": [ "schema_gait" ] }, { "page": "schema_jump", "title": "Pre-built Jump Schema", "topics": [ "schema_jump" ] }, { "page": "schema_running", "title": "Pre-built Running Schema", "topics": [ "schema_running" ] }, { "page": "schema_throw", "title": "Pre-built Throwing Schema", "topics": [ "schema_throw" ] }, { "page": "segmentParameters", "title": "Get body segment inertial parameters (BSIP)", "topics": [ "segmentParameters" ] }, { "page": "segmentPhases", "title": "Segment data into phases", "topics": [ "segmentPhases" ] }, { "page": "sem", "title": "Standard Error of Measurement (SEM)", "topics": [ "sem" ] }, { "page": "SkeletonModel", "title": "Create a SkeletonModel object", "topics": [ "SkeletonModel" ] }, { "page": "summarizeGaitParameters", "title": "Summarise gait parameters", "topics": [ "summarizeGaitParameters" ] }, { "page": "symmetryIndex", "title": "Compute bilateral symmetry index", "topics": [ "symmetryIndex" ] }, { "page": "synchronizeSignals", "title": "Synchronize multiple PhysioExperiment objects", "topics": [ "synchronizeSignals" ] }, { "page": "TaskSchema", "title": "Create a Task Schema", "topics": [ "TaskSchema" ] }, { "page": "trackMarkers", "title": "Track Markers Across Frames", "topics": [ "trackMarkers" ] }, { "page": "validateBenchmarkManifest", "title": "Validate a benchmark manifest", "topics": [ "validateBenchmarkManifest" ] }, { "page": "validateSchema", "title": "Validate a TaskSchema", "topics": [ "validateSchema" ] }, { "page": "vectorAngle", "title": "Angle between two 3D vectors", "topics": [ "vectorAngle" ] }, { "page": "waveformPCA", "title": "PCA for waveform data", "topics": [ "waveformPCA" ] }, { "page": "waveformTSNE", "title": "t-SNE embedding for waveform data", "topics": [ "waveformTSNE" ] }, { "page": "waveformUMAP", "title": "UMAP embedding for waveform data", "topics": [ "waveformUMAP" ] }, { "page": "writeBenchmarkManifest", "title": "Write a benchmark manifest template to CSV", "topics": [ "writeBenchmarkManifest" ] } ], "_readme": "https://github.com/x-biosignal/PhysioMoCap/raw/HEAD/README.md", "_rundeps": [ "abind", "Biobase", "BiocGenerics", "cli", "cpp11", "DelayedArray", "farver", "generics", "GenomicRanges", "ggplot2", "glue", "gtable", "IRanges", "isoband", "jsonlite", "labeling", "lattice", "lifecycle", "Matrix", "MatrixGenerics", "matrixStats", "PhysioCore", "R6", "RColorBrewer", "rlang", "S4Arrays", "S4Vectors", "S7", "scales", "Seqinfo", "SparseArray", "SummarizedExperiment", "vctrs", "viridisLite", "withr", "XVector" ], "_vignettes": [ { "source": "benchmark-validation.Rmd", "filename": "benchmark-validation.html", "title": "Benchmark Validation Workflow", "engine": "knitr::rmarkdown", "headings": [ "1. Create a benchmark bundle", "2. Validate manifest integrity", "3. Run benchmark suite", "4. Export reports", "5. Use real gold-standard data later" ], "created": "2026-03-16 08:33:10", "modified": "2026-03-16 08:33:10", "commits": 1 }, { "source": "emg-mocap-integration.Rmd", "filename": "emg-mocap-integration.html", "title": "EMG and MoCap Integration Workflow", "engine": "knitr::rmarkdown", "headings": [ "1. Simulate MoCap and EMG data", "2. Process EMG (rectify + RMS envelope + smoothing)", "3. Align EMG to MoCap timeline", "4. Build an integrated analysis table", "Notes" ], "created": "2026-03-16 08:33:10", "modified": "2026-03-16 08:33:10", "commits": 1 }, { "source": "forceplate-inverse-dynamics.Rmd", "filename": "forceplate-inverse-dynamics.html", "title": "Force Plate and Inverse Dynamics Workflow", "engine": "knitr::rmarkdown", "headings": [ "1. Simulate force-plate inputs", "2. Run force-plate analysis", "3. Build inverse-dynamics inputs", "4. Estimate inertial parameters and compute moments/power", "5. Multi-plate selection and 3D inverse dynamics", "Notes" ], "created": "2026-03-16 08:33:10", "modified": "2026-03-16 08:33:10", "commits": 1 }, { "source": "getting-started.Rmd", "filename": "getting-started.html", "title": "Getting Started with PhysioMoCap", "engine": "knitr::rmarkdown", "headings": [ "1. Create demo data", "2. Run one-command quick start", "3. Check data readiness", "4. Inspect key outputs", "5. Start from your own file", "6. Common input entry points", "7. Common troubleshooting" ], "created": "2026-03-16 08:33:10", "modified": "2026-03-16 08:33:10", "commits": 1 }, { "source": "gold-standard-data-download.Rmd", "filename": "gold-standard-data-download.html", "title": "Gold-Standard Data Download and Benchmark Setup", "engine": "knitr::rmarkdown", "headings": [ "1. Preconditions", "2. Create a benchmark manifest", "3. Point manifest rows to your downloaded files", "4. Validate manifest integrity", "5. Run benchmark suite", "6. Replace placeholders with real external data" ], "created": "2026-03-16 08:33:10", "modified": "2026-03-16 08:33:10", "commits": 1 } ], "_score": 3.3979400086720375, "_indexed": true, "_nocasepkg": "physiomocap", "_universes": [ "x-biosignal", "ymatts", "matsui-lab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.0", "date": "2026-05-16T05:37:38.000Z", "distro": "noble", "commit": "7047593a8caad70fa3804c733be7b31b759fea92", "fileid": "98e1719d28a73b4e1c26434b29fa86ccb2454a8f1f6fad6b2a35b8af0413dd7a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358" }, { "r": "4.6.0", "os": "linux", "version": "0.2.0", "date": "2026-05-16T05:37:33.000Z", "distro": "noble", "commit": "7047593a8caad70fa3804c733be7b31b759fea92", "fileid": "33e1b3671594889d31fcf1e7a15901b740427636d91d841dd43abc71a914c199", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358" }, { "r": "4.5.3", "os": "mac", "version": "0.2.0", "date": "2026-05-16T05:37:04.000Z", "commit": "7047593a8caad70fa3804c733be7b31b759fea92", "fileid": "2a5c255da92148ff5a3e66791a8e2fd4c09b48a9edb25e90b3592da43f2731f0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358" }, { "r": "4.6.0", "os": "mac", "version": "0.2.0", "date": "2026-05-16T05:36:58.000Z", "commit": "7047593a8caad70fa3804c733be7b31b759fea92", "fileid": "da0932f41aa5c7f6b425dec2179a8f9d54681856a9a94737eac87bf33be39068", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358" }, { "r": "4.7.0", "os": "win", "version": "0.2.0", "date": "2026-05-16T05:36:39.000Z", "commit": "7047593a8caad70fa3804c733be7b31b759fea92", "fileid": "a640644fc6b56cf65ac81b1b41d44ef21af5625f6c07d5b66b83d67297bc4347", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358" }, { "r": "4.5.3", "os": "win", "version": "0.2.0", "date": "2026-05-16T05:36:51.000Z", "commit": "7047593a8caad70fa3804c733be7b31b759fea92", "fileid": "eb0ca7f3b18b0e4fb22224e8cd22710b4fd2802a028d3368e1702e032a2d5393", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358" }, { "r": "4.6.0", "os": "win", "version": "0.2.0", "date": "2026-05-16T05:36:48.000Z", "commit": "7047593a8caad70fa3804c733be7b31b759fea92", "fileid": "bc08ee4828f3e7a23560478928dd37e9c784b8610fd3120bca84d5f2c9459e77", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.0", "date": "2026-06-02T18:55:57.000Z", "commit": "7047593a8caad70fa3804c733be7b31b759fea92", "fileid": "41a784ad883bceb8b3c65359c051165472d52b1b265ef674063c9fbb88a39693", "status": "success", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/25953916358" } ] }