{ "_id": "6ac10b3f552a13804ac7ecfb", "Package": "PhysioLake", "Title": "Versioned, Lineage-Tracked Data Management for the Physio\nEcosystem", "Version": "0.1.3", "Authors@R": "person(given = \"Yusuke\",\nfamily = \"Matsui\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mail.to.matsui@gmail.com\")", "Description": "Integrates the PhysioExperiment ecosystem with\n'OmicsLake', a versioned, on-disk data-management engine built\non 'DuckDB', 'Apache Arrow' and 'Parquet' with automatic\ndataset-level lineage tracking. Rather than reimplementing a\ndata lake, PhysioLake inherits the domain-agnostic OmicsLake\ncore (storage backend, snapshots and time-travel, cross-dataset\nlineage, query layer) and registers physiology-specific\nadapters and utilities: 'PhysioExperiment' objects are stored\nand retrieved with full fidelity, preserving the sampling-rate\nslot and the W3C-PROV provenance held in object metadata. This\nconnects the ecosystem's per-object (micro) provenance with the\nlake's cross-dataset (macro) lineage.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "Remotes": [ "matsui-lab/OmicsLake" ], "Additional_repositories": "https://matsui-lab.r-universe.dev", "Config/testthat/edition": "3", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://x-biosignal.r-universe.dev", "Date/Publication": "2026-10-03 13:11:47 UTC", "RemoteUrl": "https://github.com/x-biosignal/PhysioLake", "RemoteRef": "HEAD", "RemoteSha": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-03 13:43:25 UTC", "User": "root" }, "Author": "Yusuke Matsui [aut, cre]", "Maintainer": "Yusuke Matsui ", "_user": "x-biosignal", "_type": "src", "_file": "PhysioLake_0.1.3.tar.gz", "_fileid": "https://r2.ropensci.org/89672893e6dec048f4a2e87f22d2a30bb7d0923117ff7216c9d93880ecdc6669", "_filesize": 129240, "_sha256": "89672893e6dec048f4a2e87f22d2a30bb7d0923117ff7216c9d93880ecdc6669", "_expires": "2027-01-11T14:03:42.000Z", "_created": "2026-10-03T13:43:25.000Z", "_published": "2026-10-03T14:03:43.654Z", "_jobs": [ { "job": 111214745000, "time": 232, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11275643554" }, { "job": 111214745002, "time": 253, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11275718339" }, { "job": 111214744950, "time": 190, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11275771526" }, { "job": 111214745053, "time": 242, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11275153793" }, { "job": 111213996802, "time": 265, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11275267476" }, { "job": 111214744948, "time": 141, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11275653398" }, { "job": 111214745045, "time": 193, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11275433804" }, { "job": 111214744951, "time": 172, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11275775002" }, { "job": 111214745095, "time": 138, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11274842862" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585", "_status": "success", "_upstream": "https://github.com/x-biosignal/PhysioLake", "_commit": { "id": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "author": "Yusuke Matsui ", "committer": "Yusuke Matsui ", "message": "Release snapshot\n", "time": 1791033107 }, "_maintainer": { "name": "Yusuke Matsui", "email": "mail.to.matsui@gmail.com", "login": "ymatts", "description": "Data scientist", "uuid": 5744286 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3.0", "role": "Depends" }, { "package": "PhysioExperiment", "version": ">= 2.0.0", "role": "Depends" }, { "package": "R6", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "PhysioCore", "role": "Suggests" }, { "package": "OmicsLake", "version": ">= 0.99.4", "role": "Suggests" }, { "package": "PhysioPreprocess", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.2.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "x-biosignal", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-40", "n": 1 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "ymatts", "count": 1, "uuid": 5744286 } ], "_userbio": { "uuid": 268545536, "type": "organization", "name": "x-biosignal", "followers": 1, "description": "Open-source R packages for biosignal analysis, biomechanics, clinical research, and rehabilitation." }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PhysioLake" }, "_devurl": "https://github.com/x-biosignal/physiolake", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/PhysioLake.html", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [ "PhysioExperimentAdapter", "physioProvenance", "physioPut", "physioPutBundle", "registerPhysioAdapters" ], "_help": [ { "page": "PhysioExperimentAdapter", "title": "PhysioExperiment adapter for OmicsLake", "topics": [ "PhysioExperimentAdapter" ] }, { "page": "physioProvenance", "title": "Retrieve the provenance op-DAG stored for a lake object", "topics": [ "physioProvenance" ] }, { "page": "physioPut", "title": "Store a Physio object in a lake with its provenance linked in the lineage", "topics": [ "physioPut" ] }, { "page": "physioPutBundle", "title": "Store a reproducibility-substrate / PhysioAgent run bundle in a lake", "topics": [ "physioPutBundle" ] }, { "page": "registerPhysioAdapters", "title": "Register the Physio adapters with OmicsLake", "topics": [ "registerPhysioAdapters" ] } ], "_readme": "https://github.com/x-biosignal/PhysioLake/raw/HEAD/README.md", "_rundeps": [ "abind", "Biobase", "BiocGenerics", "cli", "DelayedArray", "digest", "generics", "GenomicRanges", "IRanges", "lattice", "lifecycle", "Matrix", "MatrixGenerics", "matrixStats", "PhysioExperiment", "R6", "rlang", "S4Arrays", "S4Vectors", "Seqinfo", "SparseArray", "SummarizedExperiment", "XVector" ], "_vignettes": [ { "source": "physiolake.Rmd", "filename": "physiolake.html", "title": "Versioned, lineage-tracked storage for PhysioExperiment objects", "engine": "knitr::rmarkdown", "headings": [ "A tiny local lake", "Store and retrieve a PhysioExperiment", "Store a run bundle with internal lineage", "Where to go next" ], "created": "2026-10-03 13:11:47", "modified": "2026-10-03 13:11:47", "commits": 1 } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "physiolake", "_universes": [ "x-biosignal", "ymatts" ], "_previous": "0.1.2", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-10-03T13:45:56.000Z", "distro": "resolute", "commit": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "fileid": "https://r2.ropensci.org/11c253965f0d896a2bb657a25c151bf0863841500404e7238ad5a224a395d3de", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585" }, { "r": "4.6.1", "os": "linux", "version": "0.1.3", "date": "2026-10-03T13:46:04.000Z", "distro": "resolute", "commit": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "fileid": "https://r2.ropensci.org/f5aed77529cad52e9b50db6dd0040428ed2c34f8c20b61f823baac2d5c0ae152", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585" }, { "r": "4.5.3", "os": "mac", "version": "0.1.3", "date": "2026-10-03T14:00:05.000Z", "commit": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "fileid": "https://r2.ropensci.org/c7c4d63ee1a77daf53293201dbc9028594f7af46acc833e444d9ca4ac8a19e5b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585" }, { "r": "4.6.1", "os": "mac", "version": "0.1.3", "date": "2026-10-03T14:00:25.000Z", "commit": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "fileid": "https://r2.ropensci.org/b325b729da9b49ab13377c848e1f3f877d65d6f6dc29e30b24afdd373e49ebb9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-10-03T13:46:16.000Z", "commit": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "fileid": "https://r2.ropensci.org/ae01a96f5fd57e2e5d67908c2e1ff04977e45a86b659d5a9e6545f6bb773c54a", "status": "success", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-10-03T13:45:00.000Z", "commit": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "fileid": "https://r2.ropensci.org/17b749e79867ce5cbf38d674b9085162d4a31f9b2306ac5cc47f4907d265c50e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585" }, { "r": "4.5.3", "os": "win", "version": "0.1.3", "date": "2026-10-03T13:45:14.000Z", "commit": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "fileid": "https://r2.ropensci.org/d147d49931c23936fd37a0bb318e4aac1ebc5e067ebcb0085b39bfba02a56522", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585" }, { "r": "4.6.1", "os": "win", "version": "0.1.3", "date": "2026-10-03T13:44:47.000Z", "commit": "106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3", "fileid": "https://r2.ropensci.org/f2d9c6d23a86df749190476679f69b175e3435373e062889cefd7ed887115103", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126912585" } ] }