{
  "_id": "6ac10af2552a13804ac7ecdc",
  "Package": "PhysioIO",
  "Title": "Input and Output Functions for 'PhysioExperiment' Objects",
  "Version": "0.2.10",
  "Authors@R": "person(given = \"Yusuke\",\nfamily = \"Matsui\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mail.to.matsui@gmail.com\")",
  "Description": "Provides input and output capabilities for\n'SummarizedExperiment'-derived physiological signal containers.\nSupported formats include 'EDF' and 'EDF+', 'BDF', 'GDF',\n'BrainVision', 'HDF5', 'BIDS', comma-separated values, and\n'MATLAB' files, together with 'DuckDB' database integration.\nOut-of-memory processing of large datasets is available through\ndelayed 'HDF5' arrays.",
  "biocViews": "Software, Infrastructure, DataImport, DataRepresentation",
  "VignetteBuilder": "knitr",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Collate": "'PhysioIO-package.R' 'utils-provenance.R' 'io-readwrite.R'\n'io-edf.R' 'io-hdf5.R' 'io-bids.R' 'io-bids-motion.R'\n'io-prov.R' 'io-wfdb.R' 'io-repositories.R' 'io-bdf.R'\n'io-fif.R' 'io-csv.R' 'io-clinical.R' 'io-matlab.R'\n'io-brainvision.R' 'io-gdf.R' 'io-arrow.R' 'bridge-mne.R'\n'db-interface.R' 'db-schema.R' 'zzz.R'",
  "RoxygenNote": "7.3.3",
  "URL": "https://github.com/x-biosignal/PhysioIO,\nhttps://x-biosignal.r-universe.dev/PhysioIO,\nhttps://x-biosignal.github.io/PhysioIO/",
  "BugReports": "https://github.com/x-biosignal/PhysioIO/issues",
  "Config/pak/sysreqs": "libssl-dev zlib1g-dev",
  "Repository": "https://x-biosignal.r-universe.dev",
  "Date/Publication": "2026-10-03 13:11:41 UTC",
  "RemoteUrl": "https://github.com/x-biosignal/PhysioIO",
  "RemoteRef": "HEAD",
  "RemoteSha": "b7e0e5b390ccbb58eb695aa7d3e4dbb38d8a4b73",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-03 13:42:24 UTC",
    "User": "root"
  },
  "Author": "Yusuke Matsui [aut, cre]",
  "Maintainer": "Yusuke Matsui <mail.to.matsui@gmail.com>",
  "_user": "x-biosignal",
  "_type": "src",
  "_file": "PhysioIO_0.2.10.tar.gz",
  "_fileid": "https://r2.ropensci.org/fef27921eb8e493019439d4bf4a4fd68b939b724cde52a59a6c5ad214c838e2d",
  "_filesize": 433888,
  "_sha256": "fef27921eb8e493019439d4bf4a4fd68b939b724cde52a59a6c5ad214c838e2d",
  "_expires": "2027-01-11T14:02:24.000Z",
  "_created": "2026-10-03T13:42:24.000Z",
  "_published": "2026-10-03T14:02:26.360Z",
  "_jobs": [
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  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/x-biosignal/actions/runs/37126859864",
  "_status": "success",
  "_upstream": "https://github.com/x-biosignal/PhysioIO",
  "_commit": {
    "id": "b7e0e5b390ccbb58eb695aa7d3e4dbb38d8a4b73",
    "author": "Yusuke Matsui <mail.to.matsui@gmail.com>",
    "committer": "Yusuke Matsui <mail.to.matsui@gmail.com>",
    "message": "Release snapshot\n",
    "time": 1791033101
  },
  "_maintainer": {
    "name": "Yusuke Matsui",
    "email": "mail.to.matsui@gmail.com",
    "login": "ymatts",
    "description": "Data scientist",
    "uuid": 5744286
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2",
      "role": "Depends"
    },
    {
      "package": "PhysioExperiment",
      "version": ">= 2.0.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "HDF5Array",
      "role": "Imports"
    },
    {
      "package": "rhdf5",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "DBI",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "digest",
      "role": "Imports"
    },
    {
      "package": "PhysioCore",
      "role": "Suggests"
    },
    {
      "package": "duckdb",
      "role": "Suggests"
    },
    {
      "package": "arrow",
      "role": "Suggests"
    },
    {
      "package": "R.matlab",
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    },
    {
      "package": "jsonvalidate",
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      "package": "knitr",
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      "package": "rmarkdown",
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    },
    {
      "package": "testthat",
      "version": ">= 3.2.0",
      "role": "Suggests"
    }
  ],
  "_owner": "x-biosignal",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2026-40",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "software",
    "infrastructure",
    "dataimport",
    "datarepresentation"
  ],
  "_stars": 0,
  "_contributors": [
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      "user": "ymatts",
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      "uuid": 5744286
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  "_userbio": {
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    "type": "organization",
    "name": "x-biosignal",
    "followers": 1,
    "description": "Open-source R packages for biosignal analysis, biomechanics, clinical research, and rehabilitation."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PhysioIO"
  },
  "_devurl": "https://github.com/x-biosignal/physioio",
  "_pkgdown": "https://x-biosignal.github.io/PhysioIO/",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/PhysioIO.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "attachBIDSPhysio",
    "bdfTriggerEvents",
    "connectDatabase",
    "dbStats",
    "deleteExperiment",
    "disconnectDatabase",
    "downloadFigshare",
    "downloadFromDOI",
    "downloadMendeley",
    "downloadPhysioNet",
    "downloadZenodo",
    "figshareCollectionArticles",
    "fromMNE",
    "hasMNE",
    "initPhysioSchema",
    "isHDF5Backed",
    "listBIDSSessions",
    "listBIDSSubjects",
    "listWFDBRecords",
    "loadExperiment",
    "mapClinicalCodes",
    "mendeleyDatasetFiles",
    "pyMNEVersion",
    "queryExperiments",
    "readBDF",
    "readBDFStatus",
    "readBIDS",
    "readBIDSDerivatives",
    "readBIDSMotion",
    "readBIDSPhysio",
    "readBrainVision",
    "readClinicalMetadataCSV",
    "readCSV",
    "readEDF",
    "readElectrodePositionsCSV",
    "readEventsCSV",
    "readFIF",
    "readGDF",
    "readMAT",
    "readParquet",
    "readPhysio",
    "readPhysioHDF5",
    "readProv",
    "readWFDB",
    "readWFDBAnnotation",
    "realizeHDF5",
    "registerExperiment",
    "registerParquetAssay",
    "toMNE",
    "validateBIDS",
    "validateClinicalMetadata",
    "writeAssayHDF5",
    "writeBDF",
    "writeBIDS",
    "writeBIDSDerivative",
    "writeBIDSMotion",
    "writeBIDSPhysio",
    "writeBrainVision",
    "writeCSV",
    "writeEDF",
    "writeElectrodePositionsCSV",
    "writeEventsCSV",
    "writeGDF",
    "writeMAT",
    "writeParquet",
    "writePhysio",
    "writePhysioHDF5",
    "writeProv",
    "writeWFDB",
    "writeWFDBAnnotation"
  ],
  "_help": [
    {
      "page": "attachBIDSPhysio",
      "title": "Attach a physio recording to a main recording as an aligned stream",
      "topics": [
        "attachBIDSPhysio"
      ]
    },
    {
      "page": "bdfTriggerEvents",
      "title": "Extract trigger events from a BioSemi Status channel",
      "topics": [
        "bdfTriggerEvents"
      ]
    },
    {
      "page": "connectDatabase",
      "title": "Lightweight database interface",
      "topics": [
        "connectDatabase",
        "disconnectDatabase"
      ]
    },
    {
      "page": "dbStats",
      "title": "Get database statistics",
      "topics": [
        "dbStats"
      ]
    },
    {
      "page": "deleteExperiment",
      "title": "Delete experiment from database",
      "topics": [
        "deleteExperiment"
      ]
    },
    {
      "page": "downloadFigshare",
      "title": "Download files from a public figshare article",
      "topics": [
        "downloadFigshare"
      ]
    },
    {
      "page": "downloadFromDOI",
      "title": "Download a dataset from its DOI (figshare, Zenodo or Mendeley Data)",
      "topics": [
        "downloadFromDOI"
      ]
    },
    {
      "page": "downloadMendeley",
      "title": "Download files from a Mendeley Data dataset",
      "topics": [
        "downloadMendeley"
      ]
    },
    {
      "page": "downloadPhysioNet",
      "title": "Download a WFDB record from PhysioNet",
      "topics": [
        "downloadPhysioNet"
      ]
    },
    {
      "page": "downloadZenodo",
      "title": "Download files from a public Zenodo record",
      "topics": [
        "downloadZenodo"
      ]
    },
    {
      "page": "figshareCollectionArticles",
      "title": "List the articles in a public figshare collection",
      "topics": [
        "figshareCollectionArticles"
      ]
    },
    {
      "page": "fromMNE",
      "title": "Convert an MNE-Python Raw object to a PhysioExperiment",
      "topics": [
        "fromMNE"
      ]
    },
    {
      "page": "hasMNE",
      "title": "Is the Python 'mne' module available?",
      "topics": [
        "hasMNE"
      ]
    },
    {
      "page": "initPhysioSchema",
      "title": "DuckDB Schema Management for PhysioExperiment",
      "topics": [
        "initPhysioSchema"
      ]
    },
    {
      "page": "isHDF5Backed",
      "title": "Check if assays are HDF5-backed",
      "topics": [
        "isHDF5Backed"
      ]
    },
    {
      "page": "listBIDSSessions",
      "title": "List sessions for a subject in BIDS dataset",
      "topics": [
        "listBIDSSessions"
      ]
    },
    {
      "page": "listBIDSSubjects",
      "title": "List subjects in a BIDS dataset",
      "topics": [
        "listBIDSSubjects"
      ]
    },
    {
      "page": "listWFDBRecords",
      "title": "List the records in a WFDB RECORDS file",
      "topics": [
        "listWFDBRecords"
      ]
    },
    {
      "page": "loadExperiment",
      "title": "Load experiment from database",
      "topics": [
        "loadExperiment"
      ]
    },
    {
      "page": "mapClinicalCodes",
      "title": "Harmonize clinical codes across sites",
      "topics": [
        "mapClinicalCodes"
      ]
    },
    {
      "page": "mendeleyDatasetFiles",
      "title": "List the files of a public Mendeley Data dataset",
      "topics": [
        "mendeleyDatasetFiles"
      ]
    },
    {
      "page": "pyMNEVersion",
      "title": "Version of the available Python 'mne' module",
      "topics": [
        "pyMNEVersion"
      ]
    },
    {
      "page": "queryExperiments",
      "title": "Query experiments from database",
      "topics": [
        "queryExperiments"
      ]
    },
    {
      "page": "readBDF",
      "title": "Read BDF (BioSemi Data Format) file",
      "topics": [
        "readBDF"
      ]
    },
    {
      "page": "readBDFStatus",
      "title": "Read the BioSemi Status channel of a BDF file",
      "topics": [
        "readBDFStatus"
      ]
    },
    {
      "page": "readBIDS",
      "title": "BIDS Format Support for PhysioExperiment",
      "topics": [
        "readBIDS"
      ]
    },
    {
      "page": "readBIDSDerivatives",
      "title": "Read the derivative recordings of a subject",
      "topics": [
        "readBIDSDerivatives"
      ]
    },
    {
      "page": "readBIDSMotion",
      "title": "Read a Motion-BIDS recording",
      "topics": [
        "readBIDSMotion"
      ]
    },
    {
      "page": "readBIDSPhysio",
      "title": "Read a BIDS continuous physiological recording",
      "topics": [
        "readBIDSPhysio"
      ]
    },
    {
      "page": "readBrainVision",
      "title": "BrainVision File Format I/O for PhysioExperiment",
      "topics": [
        "readBrainVision"
      ]
    },
    {
      "page": "readClinicalMetadataCSV",
      "title": "Clinical metadata CSV I/O and validation",
      "topics": [
        "readClinicalMetadataCSV"
      ]
    },
    {
      "page": "readCSV",
      "title": "CSV/TSV I/O for PhysioExperiment",
      "topics": [
        "readCSV"
      ]
    },
    {
      "page": "readEDF",
      "title": "EDF/EDF+ file I/O",
      "topics": [
        "readEDF"
      ]
    },
    {
      "page": "readElectrodePositionsCSV",
      "title": "Read electrode positions from CSV",
      "topics": [
        "readElectrodePositionsCSV"
      ]
    },
    {
      "page": "readEventsCSV",
      "title": "Read events from CSV/TSV file",
      "topics": [
        "readEventsCSV"
      ]
    },
    {
      "page": "readFIF",
      "title": "Read an Elekta/Neuromag/MNE FIF (FIFF) file",
      "topics": [
        "readFIF"
      ]
    },
    {
      "page": "readGDF",
      "title": "GDF (General Data Format) File I/O for PhysioExperiment",
      "topics": [
        "readGDF"
      ]
    },
    {
      "page": "readMAT",
      "title": "Read PhysioExperiment from MATLAB .mat file",
      "topics": [
        "readMAT"
      ]
    },
    {
      "page": "readParquet",
      "title": "Read a PhysioExperiment from a Parquet dataset directory",
      "topics": [
        "readParquet"
      ]
    },
    {
      "page": "readPhysioHDF5",
      "title": "Read PhysioExperiment from HDF5",
      "topics": [
        "readPhysioHDF5"
      ]
    },
    {
      "page": "readProv",
      "title": "Read a W3C PROV interchange file back into a provenance table",
      "topics": [
        "readProv"
      ]
    },
    {
      "page": "readWFDB",
      "title": "Read a WFDB record",
      "topics": [
        "readWFDB"
      ]
    },
    {
      "page": "readWFDBAnnotation",
      "title": "Read a WFDB annotation file",
      "topics": [
        "readWFDBAnnotation"
      ]
    },
    {
      "page": "realizeHDF5",
      "title": "Realize HDF5-backed data to memory",
      "topics": [
        "realizeHDF5"
      ]
    },
    {
      "page": "registerExperiment",
      "title": "Register a PhysioExperiment in the database",
      "topics": [
        "registerExperiment"
      ]
    },
    {
      "page": "registerParquetAssay",
      "title": "Register a Parquet-backed assay as a DuckDB view for out-of-core queries",
      "topics": [
        "registerParquetAssay"
      ]
    },
    {
      "page": "toMNE",
      "title": "Convert a PhysioExperiment to an MNE-Python RawArray",
      "topics": [
        "toMNE"
      ]
    },
    {
      "page": "validateBIDS",
      "title": "Validate BIDS dataset structure",
      "topics": [
        "validateBIDS"
      ]
    },
    {
      "page": "validateClinicalMetadata",
      "title": "Validate clinical metadata",
      "topics": [
        "validateClinicalMetadata"
      ]
    },
    {
      "page": "writeAssayHDF5",
      "title": "Write assay to HDF5 file",
      "topics": [
        "writeAssayHDF5"
      ]
    },
    {
      "page": "writeBDF",
      "title": "Write BDF (BioSemi Data Format) file",
      "topics": [
        "writeBDF"
      ]
    },
    {
      "page": "writeBIDS",
      "title": "Write PhysioExperiment to BIDS format",
      "topics": [
        "writeBIDS"
      ]
    },
    {
      "page": "writeBIDSDerivative",
      "title": "Write a BIDS derivative recording",
      "topics": [
        "writeBIDSDerivative"
      ]
    },
    {
      "page": "writeBIDSMotion",
      "title": "Write a Motion-BIDS recording",
      "topics": [
        "writeBIDSMotion"
      ]
    },
    {
      "page": "writeBIDSPhysio",
      "title": "Write a BIDS continuous physiological recording",
      "topics": [
        "writeBIDSPhysio"
      ]
    },
    {
      "page": "writeBrainVision",
      "title": "Write PhysioExperiment to BrainVision format",
      "topics": [
        "writeBrainVision"
      ]
    },
    {
      "page": "writeCSV",
      "title": "Write PhysioExperiment to CSV file",
      "topics": [
        "writeCSV"
      ]
    },
    {
      "page": "writeEDF",
      "title": "Write EDF file",
      "topics": [
        "writeEDF"
      ]
    },
    {
      "page": "writeElectrodePositionsCSV",
      "title": "Write electrode positions to CSV",
      "topics": [
        "writeElectrodePositionsCSV"
      ]
    },
    {
      "page": "writeEventsCSV",
      "title": "Write events to CSV file",
      "topics": [
        "writeEventsCSV"
      ]
    },
    {
      "page": "writeGDF",
      "title": "Write PhysioExperiment to GDF format",
      "topics": [
        "writeGDF"
      ]
    },
    {
      "page": "writeMAT",
      "title": "Write PhysioExperiment to MATLAB .mat file",
      "topics": [
        "writeMAT"
      ]
    },
    {
      "page": "writeParquet",
      "title": "Write a PhysioExperiment to a Parquet dataset directory",
      "topics": [
        "writeParquet"
      ]
    },
    {
      "page": "writePhysio",
      "title": "Basic read/write helpers",
      "topics": [
        "readPhysio",
        "writePhysio"
      ]
    },
    {
      "page": "writePhysioHDF5",
      "title": "HDF5 Backend for PhysioExperiment",
      "topics": [
        "writePhysioHDF5"
      ]
    },
    {
      "page": "writeProv",
      "title": "Serialize a provenance trail to a W3C PROV interchange file",
      "topics": [
        "writeProv"
      ]
    },
    {
      "page": "writeWFDB",
      "title": "Write a WFDB record",
      "topics": [
        "writeWFDB"
      ]
    },
    {
      "page": "writeWFDBAnnotation",
      "title": "Write a WFDB annotation file",
      "topics": [
        "writeWFDBAnnotation"
      ]
    }
  ],
  "_readme": "https://github.com/x-biosignal/PhysioIO/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "Biobase",
    "BiocGenerics",
    "biocmake",
    "cli",
    "DBI",
    "DelayedArray",
    "digest",
    "dir.expiry",
    "filelock",
    "generics",
    "GenomicRanges",
    "h5mread",
    "HDF5Array",
    "IRanges",
    "jsonlite",
    "lattice",
    "lifecycle",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "PhysioExperiment",
    "rhdf5",
    "rhdf5filters",
    "Rhdf5lib",
    "rlang",
    "S4Arrays",
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