Package: PhysioNIRS
Title: Governed Near-Infrared Spectroscopy Data and SNIRF Input/Output
Version: 0.6.1
Authors@R: 
    person(given = "Yusuke",
           family = "Matsui",
           role = c("aut", "cre"),
           email = "mail.to.matsui@gmail.com")
Description: Provides strict input, output, measurement identity, probe
        geometry, optical-density, modified Beer-Lambert,
        motion-correction, and short-separation nuisance,
        signal-quality, channel-pruning, and live neurofeedback
        contracts for continuous-wave functional near-infrared
        spectroscopy data stored in 'PhysioExperiment' objects. Shared
        Near Infrared Spectroscopy Format ('SNIRF') files are read and
        written through structured 'HDF5' APIs while preserving time
        bases, measurement order, probe coordinates, metadata tags,
        stimulus tables, and processing provenance.
Depends: R (>= 4.2), PhysioExperiment (>= 2.0.0)
Imports: digest, methods, PhysioStream (>= 0.9.0), rhdf5, S4Vectors,
        signal, SummarizedExperiment, stats
Suggests: PhysioCore, testthat (>= 3.2.0), knitr, rmarkdown
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
Collate: 'PhysioNIRS-package.R' 'examples-data.R' 'snirf-contract.R'
        'io-snirf.R' 'probe.R' 'optical-density.R' 'dpf.R'
        'extinction.R' 'mbll.R' 'motion-contract.R' 'motion-detect.R'
        'motion-tddr.R' 'motion-wavelet.R' 'motion-spline.R'
        'short-separation-contract.R' 'short-separation.R'
        'physiology-band.R' 'nuisance-design.R' 'quality-contract.R'
        'quality.R' 'neurofeedback.R' 'activation-glm.R' 'zzz.R'
URL: https://github.com/x-biosignal/PhysioNIRS,
        https://x-biosignal.r-universe.dev/PhysioNIRS,
        https://x-biosignal.github.io/PhysioNIRS/
BugReports: https://github.com/x-biosignal/PhysioNIRS/issues
Config/roxygen2/version: 8.0.0
RoxygenNote: 7.3.3
Config/pak/sysreqs: libxml2-dev libssl-dev zlib1g-dev
Repository: https://x-biosignal.r-universe.dev
Date/Publication: 2026-10-03 13:11:43 UTC
RemoteUrl: https://github.com/x-biosignal/PhysioNIRS
RemoteRef: HEAD
RemoteSha: f9c150833ba0c3456101fdeff60533f3359391ec
NeedsCompilation: no
Packaged: 2026-10-03 14:13:44 UTC; root
Author: Yusuke Matsui [aut, cre]
Maintainer: Yusuke Matsui <mail.to.matsui@gmail.com>