Package: PhysioLake
Title: Versioned, Lineage-Tracked Data Management for the Physio
        Ecosystem
Version: 0.1.3
Authors@R: 
    person(given = "Yusuke",
           family = "Matsui",
           role = c("aut", "cre"),
           email = "mail.to.matsui@gmail.com")
Description: Integrates the PhysioExperiment ecosystem with
        'OmicsLake', a versioned, on-disk data-management engine built
        on 'DuckDB', 'Apache Arrow' and 'Parquet' with automatic
        dataset-level lineage tracking. Rather than reimplementing a
        data lake, PhysioLake inherits the domain-agnostic OmicsLake
        core (storage backend, snapshots and time-travel, cross-dataset
        lineage, query layer) and registers physiology-specific
        adapters and utilities: 'PhysioExperiment' objects are stored
        and retrieved with full fidelity, preserving the sampling-rate
        slot and the W3C-PROV provenance held in object metadata. This
        connects the ecosystem's per-object (micro) provenance with the
        lake's cross-dataset (macro) lineage.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.3.0), PhysioExperiment (>= 2.0.0)
Imports: R6, methods, S4Vectors, SummarizedExperiment
Suggests: PhysioCore, OmicsLake (>= 0.99.4), PhysioPreprocess, testthat
        (>= 3.2.0), knitr, rmarkdown
VignetteBuilder: knitr
Remotes: matsui-lab/OmicsLake
Additional_repositories: https://matsui-lab.r-universe.dev
Config/testthat/edition: 3
Config/pak/sysreqs: zlib1g-dev
Repository: https://x-biosignal.r-universe.dev
Date/Publication: 2026-10-03 13:11:47 UTC
RemoteUrl: https://github.com/x-biosignal/PhysioLake
RemoteRef: HEAD
RemoteSha: 106fdbe2ba7fd51a0a3b0db15836cbfea54a29c3
NeedsCompilation: no
Packaged: 2026-10-03 13:43:25 UTC; root
Author: Yusuke Matsui [aut, cre]
Maintainer: Yusuke Matsui <mail.to.matsui@gmail.com>