Package: PhysioAnalysis
Title: Analysis and Visualization for PhysioExperiment Objects
Version: 0.5.30
Authors@R: 
    person(given = "Yusuke",
           family = "Matsui",
           role = c("aut", "cre"),
           email = "mail.to.matsui@gmail.com")
Description: Provides analysis and visualization functions for
        physiological signal data stored in 'PhysioExperiment' objects,
        which extend the Bioconductor 'SummarizedExperiment' container.
        Methods include the fast Fourier transform ('FFT'),
        time-frequency decomposition, epoching, functional connectivity
        (coherence and phase-based measures), graph and network
        metrics, statistical parametric mapping, and cluster-based
        permutation testing. Visualization utilities cover scalp
        topographic maps ('topoplots'), multichannel signal displays,
        and network graphs. Compiled routines are provided through
        'Rcpp' and 'RcppArmadillo'.
Depends: R (>= 4.2), PhysioExperiment (>= 2.0.0)
Imports: methods, SummarizedExperiment, S4Vectors, signal, stats,
        graphics, grDevices, ggplot2, parallel, Rcpp (>= 1.0.0)
LinkingTo: Rcpp, RcppArmadillo
Suggests: PhysioCore, igraph, knitr, rmarkdown, testthat (>= 3.2.0)
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Collate: 'PhysioAnalysis-package.R' 'RcppExports.R'
        'utils-provenance.R' 'ops-fft.R' 'ops-timefreq.R'
        'ops-specparam.R' 'ops-epoch.R' 'ops-epoch-sliding.R'
        'ops-connectivity.R' 'ops-network.R' 'stats-spm.R'
        'stats-spm-regress.R' 'stats-spm-manova.R'
        'stats-spm-nonparam.R' 'stats-tests.R'
        'stats-effectsize-rank.R' 'stats-network.R' 'vis-plot.R'
        'vis-multichannel.R' 'vis-topomap.R' 'vis-network.R'
        'stats-functional-regression.R' 'stats-functional-mixed.R'
        'reexports-stats.R' 'zzz.R'
VignetteBuilder: knitr
RoxygenNote: 7.3.3
URL: https://github.com/x-biosignal/PhysioAnalysis,
        https://x-biosignal.r-universe.dev/PhysioAnalysis
BugReports: https://github.com/x-biosignal/PhysioAnalysis/issues
Config/pak/sysreqs: zlib1g-dev
Repository: https://x-biosignal.r-universe.dev
Date/Publication: 2026-10-03 13:11:42 UTC
RemoteUrl: https://github.com/x-biosignal/PhysioAnalysis
RemoteRef: HEAD
RemoteSha: f29df30bcb0879694ff32e1bef9fab3a8ee21842
NeedsCompilation: yes
Packaged: 2026-10-03 13:42:03 UTC; root
Author: Yusuke Matsui [aut, cre]
Maintainer: Yusuke Matsui <mail.to.matsui@gmail.com>